JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEIL3_chr4_177304874_177367936	0/0	c0043	1818	1	1	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0044	1818	1	0	1	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0045	1818	1	1	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0046	1818	1	1	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0047	1818	1	1	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0048	1818	1	1	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0049	1818	1	1	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEK10_chr3_27101484_27374383	1/1	c0001	3348	67	1	12	34	4	14	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0002	3348	65	25	11	20	5	4	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0003	3348	28	4	9	8	3	4	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0004	3348	19	18	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0005	3348	15	5	0	10	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0006	3348	5	0	0	4	1	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0007	3348	5	3	0	0	1	1	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0008	3348	3	3	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0009	3348	2	2	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0010	3348	2	0	0	0	0	2	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0011	3348	2	2	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0012	3348	2	0	1	0	0	1	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0013	3348	2	0	2	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0014	3348	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0015	3348	1	0	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0016	3348	1	0	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0017	3348	1	0	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0018	3348	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0019	3348	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0020	3348	1	0	0	0	1	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0021	3348	1	0	0	0	1	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0022	3272	1	1	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0023	3348	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0024	3348	1	1	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0025	3348	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0026	3348	1	1	0	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0027	3348	1	0	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0028	3348	1	0	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0029	3348	1	0	0	1	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK10_chr3_27101484_27374383	0/0	c0030	3348	1	0	1	0	0	0	copy fasta	NEK10	chr3	27101484	27374383
NEK11_chr3_131021877_131355465	0/1	c0001	1938	104	13	24	46	5	15	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	1/0	c0002	1938	98	32	15	36	5	9	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0003	1938	49	22	7	19	0	1	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0004	1938	18	0	1	14	0	3	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0005	1938	4	4	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0006	1938	4	4	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0007	1938	2	0	2	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0008	1938	1	0	1	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0009	1938	1	0	1	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0010	1938	1	1	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0011	1938	1	0	1	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0012	1938	1	1	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0013	1938	1	1	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465