JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEK11_chr3_131021877_131355465	0/0	c0014	1938	1	1	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0015	1938	1	1	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0016	1938	1	0	0	1	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0017	1938	1	0	0	0	0	1	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0018	1938	1	1	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0019	1938	1	0	0	0	0	1	copy fasta	NEK11	chr3	131021877	131355465
NEK11_chr3_131021877_131355465	0/0	c0020	1938	1	1	0	0	0	0	copy fasta	NEK11	chr3	131021877	131355465
NEK1_chr4_169387809_169617583	1/0	c0001	3861	130	40	22	40	5	22	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/1	c0002	3861	51	5	8	32	2	3	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0003	3861	19	16	3	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0004	3861	19	7	2	8	2	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0005	3861	9	7	0	0	0	2	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0006	3861	6	0	2	0	2	2	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0007	3861	6	1	2	0	2	1	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0008	3861	5	4	1	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0009	3861	3	3	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0010	3861	2	0	0	0	0	2	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0011	3861	1	1	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0012	3861	1	1	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0013	3861	1	1	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0014	3861	1	0	0	0	1	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0015	3861	1	1	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0016	3861	1	0	1	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0017	3861	1	1	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0018	3861	1	1	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0019	3861	1	0	1	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK1_chr4_169387809_169617583	0/0	c0020	3861	1	1	0	0	0	0	copy fasta	NEK1	chr4	169387809	169617583
NEK2_chr1_211657772_211680621	1/0	c0001	1338	145	41	29	52	9	13	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/1	c0002	1338	116	12	15	75	2	11	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	c0003	1338	90	12	17	51	4	6	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	c0004	1338	43	20	3	12	1	7	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	c0005	1338	12	0	8	0	0	4	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	c0006	1338	3	3	0	0	0	0	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	c0007	1338	2	0	0	2	0	0	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	c0008	1338	1	0	0	0	0	1	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	c0009	1338	1	1	0	0	0	0	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	c0010	1338	1	0	0	1	0	0	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	c0011	1338	1	1	0	0	0	0	copy fasta	NEK2	chr1	211657772	211680621
NEK2_chr1_211657772_211680621	0/0	c0012	1338	1	0	0	1	0	0	copy fasta	NEK2	chr1	211657772	211680621
NEK3_chr13_52127647_52164597	0/1	c0001	1520	212	65	27	91	5	23	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	1/0	c0002	1521	99	12	15	62	2	7	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	c0003	1521	65	4	24	22	5	10	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	c0004	1521	8	0	8	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	c0005	1521	5	5	0	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	c0006	1521	3	2	1	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	c0007	1521	1	0	0	1	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	c0008	1521	1	0	1	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	c0009	1521	1	1	0	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	c0010	1520	1	0	0	0	0	1	copy fasta	NEK3	chr13	52127647	52164597
NEK3_chr13_52127647_52164597	0/0	c0011	1521	1	0	0	0	0	1	copy fasta	NEK3	chr13	52127647	52164597