JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEK3_chr13_52127647_52164597	0/0	c0012	1520	1	1	0	0	0	0	copy fasta	NEK3	chr13	52127647	52164597
NEK4_chr3_52703444_52775940	1/1	c0001	2526	174	44	39	62	10	17	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	c0002	2526	100	9	24	57	4	6	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	c0003	2526	21	21	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	c0004	2526	10	10	0	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	c0005	2526	4	2	0	0	0	2	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	c0006	2526	2	0	2	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	c0007	2526	2	0	0	0	0	2	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	c0008	2526	1	0	0	1	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	c0009	2526	1	0	0	1	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	c0010	2526	1	0	0	0	0	1	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	c0011	2526	1	0	1	0	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK4_chr3_52703444_52775940	0/0	c0012	2526	1	0	0	1	0	0	copy fasta	NEK4	chr3	52703444	52775940
NEK5_chr13_52028611_52134073	1/1	c0001	2499	276	58	51	133	6	26	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	c0002	2499	31	1	13	10	4	3	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	c0003	2499	9	1	1	4	0	3	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	c0004	2499	3	3	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	c0005	2499	3	2	1	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	c0006	2499	2	1	1	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	c0007	2499	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	c0008	2499	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	c0009	2499	1	0	1	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	c0010	2499	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	c0011	2499	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	c0012	2499	1	0	0	0	0	1	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	c0013	2499	1	0	0	0	0	1	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	c0014	2499	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	c0015	2499	1	1	0	0	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK5_chr13_52028611_52134073	0/0	c0016	2499	1	0	0	1	0	0	copy fasta	NEK5	chr13	52028611	52134073
NEK6_chr9_124252949_124358307	0/1	c0001	942	333	61	66	153	14	38	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	1/0	c0002	942	25	22	2	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	c0003	942	7	6	1	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	c0004	942	1	0	1	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	c0005	942	1	0	0	1	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK6_chr9_124252949_124358307	0/0	c0006	942	1	1	0	0	0	0	copy fasta	NEK6	chr9	124252949	124358307
NEK7_chr1_198151998_198327420	1/1	c0001	909	340	86	59	143	12	38	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	c0002	909	5	0	0	5	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK7_chr1_198151998_198327420	0/0	c0003	909	1	0	1	0	0	0	copy fasta	NEK7	chr1	198151998	198327420
NEK8_chr17_28723788_28748455	1/0	c0001	2079	267	48	55	119	7	37	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	c0002	2079	84	32	9	34	1	8	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	c0003	2079	5	1	4	0	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	c0004	2079	3	0	0	3	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	c0005	2079	3	3	0	0	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	c0006	2079	2	0	0	2	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	c0007	2079	1	0	0	1	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	c0008	2079	1	1	0	0	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	c0009	2079	1	0	0	0	0	1	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	c0010	2079	1	1	0	0	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/0	c0011	2079	1	0	0	1	0	0	copy fasta	NEK8	chr17	28723788	28748455
NEK8_chr17_28723788_28748455	0/1	c0012	2079	1	0	0	0	0	0	copy fasta	NEK8	chr17	28723788	28748455