JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEK9_chr14_75074353_75132048	0/1	c0001	2940	120	18	23	55	7	16	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0002	2940	100	39	24	18	5	14	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0003	2940	13	13	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	1/0	c0004	2940	12	6	2	2	0	1	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0005	2940	7	7	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0006	2940	5	0	0	5	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0007	2940	5	0	5	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0008	2940	4	3	1	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0009	2940	3	2	1	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0010	2940	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0011	2940	1	0	0	0	0	1	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0012	2940	1	0	1	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0013	2940	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0014	2940	1	0	0	1	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0015	2940	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0016	2940	1	1	0	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0017	2940	1	0	1	0	0	0	copy fasta	NEK9	chr14	75074353	75132048
NEK9_chr14_75074353_75132048	0/0	c0018	2940	1	0	0	1	0	0	copy fasta	NEK9	chr14	75074353	75132048
NELFA_chr4_1977723_2013974	1/1	c0001	1587	238	60	61	72	11	32	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	c0002	1587	97	0	16	71	2	8	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	c0003	1587	10	7	1	2	0	0	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	c0004	1587	5	0	0	5	0	0	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	c0005	1587	3	2	1	0	0	0	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	c0006	1587	2	0	1	0	1	0	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	c0007	1587	1	0	0	0	0	1	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	c0008	1587	1	1	0	0	0	0	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	c0009	1587	1	0	0	0	0	1	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	c0010	1587	1	0	0	1	0	0	copy fasta	NELFA	chr4	1977723	2013974
NELFA_chr4_1977723_2013974	0/0	c0011	1587	1	0	0	1	0	0	copy fasta	NELFA	chr4	1977723	2013974
NELFB_chr9_137250327_137278542	0/1	c0001	1887	196	50	35	76	8	26	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	1/0	c0002	1887	141	40	23	63	4	10	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0003	1887	7	0	7	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0004	1887	3	0	2	0	1	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0005	1887	2	0	0	2	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0006	1887	2	2	0	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0007	1887	1	0	0	1	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0008	1887	1	0	0	0	1	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0009	1887	1	0	1	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0010	1887	1	0	0	0	0	1	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0011	1887	1	0	0	1	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0012	1887	1	0	0	1	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0013	1887	1	1	0	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0014	1887	1	0	0	0	0	1	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0015	1887	1	0	1	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0016	1887	1	0	0	1	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0017	1887	1	0	1	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0018	1887	1	1	0	0	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFB_chr9_137250327_137278542	0/0	c0019	1887	1	0	0	1	0	0	copy fasta	NELFB	chr9	137250327	137278542
NELFCD_chr20_58976256_59000113	1/0	c0001	1746	359	88	66	156	11	37	copy fasta	NELFCD	chr20	58976256	59000113
NELFCD_chr20_58976256_59000113	0/0	c0002	1746	54	3	10	29	2	10	copy fasta	NELFCD	chr20	58976256	59000113