JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APC2_chr19_1445121_1478244	0/0	c0066	6912	1	0	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APCDD1L_chr20_58454101_58520399	0/0	c0001	1506	139	45	25	48	6	15	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	1/1	c0002	1506	120	28	31	37	6	16	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0003	1506	43	3	3	36	0	1	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0004	1506	17	4	1	11	0	1	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0005	1506	14	1	5	8	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0006	1506	13	0	2	11	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0007	1506	5	4	1	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0008	1506	4	0	0	4	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0009	1506	3	0	0	3	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0010	1506	3	3	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0011	1506	2	2	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0012	1506	2	2	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0013	1506	1	0	0	1	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0014	1506	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0015	1506	1	0	0	1	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0016	1506	1	0	0	0	1	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0017	1506	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0018	1506	1	0	0	0	0	1	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0019	1506	1	0	0	1	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0020	1506	1	0	0	0	1	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0021	1506	1	0	0	1	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0022	1506	1	0	0	1	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	c0023	1506	1	0	0	1	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1_chr18_10449635_10494949	1/1	c0001	1545	171	46	25	70	11	17	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0002	1545	159	18	33	90	5	13	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0003	1545	43	0	7	25	2	9	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0004	1545	24	23	1	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0005	1545	7	0	2	1	0	4	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0006	1545	4	3	1	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0007	1545	3	0	2	0	0	1	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0008	1545	2	2	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0009	1545	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0010	1545	1	0	1	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0011	1545	1	0	0	1	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0012	1545	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0013	1545	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0014	1545	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0015	1545	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0016	1545	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	c0017	1545	1	0	0	1	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCS_chr1_159582826_159593865	0/1	c0001	672	379	88	65	189	8	28	copy fasta	APCS	chr1	159582826	159593865
APCS_chr1_159582826_159593865	1/0	c0002	672	32	2	12	2	4	11	copy fasta	APCS	chr1	159582826	159593865
APCS_chr1_159582826_159593865	0/0	c0003	672	9	0	1	5	0	3	copy fasta	APCS	chr1	159582826	159593865
APCS_chr1_159582826_159593865	0/0	c0004	672	1	0	0	0	0	1	copy fasta	APCS	chr1	159582826	159593865
APCS_chr1_159582826_159593865	0/0	c0005	672	1	0	0	0	0	1	copy fasta	APCS	chr1	159582826	159593865
APC_chr5_112732885_112851239	0/1	c0001	8532	96	5	26	47	2	15	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0002	8532	67	30	6	26	1	4	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0003	8532	44	20	8	13	1	2	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	1/0	c0004	8532	40	2	11	17	2	7	copy fasta	APC	chr5	112732885	112851239