JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEMF_chr14_49777083_49857788	0/0	c0007	3231	1	0	0	1	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	c0008	3231	1	0	0	1	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	c0009	3231	1	0	0	1	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	c0010	3231	1	0	0	1	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	c0011	3231	1	1	0	0	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMF_chr14_49777083_49857788	0/0	c0012	3231	1	0	1	0	0	0	copy fasta	NEMF	chr14	49777083	49857788
NEMP1_chr12_57050643_57083791	1/1	c0001	1335	360	80	73	152	15	38	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	c0002	1335	21	0	0	21	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	c0003	1335	7	0	3	0	1	3	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	c0004	1335	3	3	0	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	c0005	1335	2	2	0	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	c0006	1335	2	2	0	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	c0007	1335	1	0	0	0	0	1	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	c0008	1335	1	1	0	0	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP1_chr12_57050643_57083791	0/0	c0009	1335	1	0	0	1	0	0	copy fasta	NEMP1	chr12	57050643	57083791
NEMP2_chr2_190499338_190539722	0/1	c0001	1254	196	24	50	96	6	19	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	1/0	c0002	1254	140	59	12	55	5	8	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	c0003	1254	55	1	9	37	1	7	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	c0004	1254	5	5	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	c0005	1254	5	0	1	0	0	4	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	c0006	1254	1	0	0	1	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	c0007	1254	1	1	0	0	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NEMP2_chr2_190499338_190539722	0/0	c0008	1254	1	0	0	1	0	0	copy fasta	NEMP2	chr2	190499338	190539722
NENF_chr1_212427920_212451379	0/1	c0001	519	219	30	41	126	4	17	copy fasta	NENF	chr1	212427920	212451379
NENF_chr1_212427920_212451379	1/0	c0002	519	180	50	27	69	10	23	copy fasta	NENF	chr1	212427920	212451379
NENF_chr1_212427920_212451379	0/0	c0003	519	11	9	2	0	0	0	copy fasta	NENF	chr1	212427920	212451379
NENF_chr1_212427920_212451379	0/0	c0004	519	2	2	0	0	0	0	copy fasta	NENF	chr1	212427920	212451379
NENF_chr1_212427920_212451379	0/0	c0005	519	1	0	1	0	0	0	copy fasta	NENF	chr1	212427920	212451379
NENF_chr1_212427920_212451379	0/0	c0006	519	1	0	1	0	0	0	copy fasta	NENF	chr1	212427920	212451379
NENF_chr1_212427920_212451379	0/0	c0007	519	1	0	0	1	0	0	copy fasta	NENF	chr1	212427920	212451379
NENF_chr1_212427920_212451379	0/0	c0008	519	1	1	0	0	0	0	copy fasta	NENF	chr1	212427920	212451379
NEO1_chr15_73047463_73310205	1/0	c0001	4386	146	32	15	70	7	21	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/1	c0002	4386	107	11	31	41	5	18	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0003	4386	19	12	6	0	0	1	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0004	4386	11	6	0	5	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0005	4386	7	2	2	0	2	1	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0006	4386	7	0	0	7	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0007	4386	6	0	0	6	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0008	4386	3	0	0	3	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0009	4386	2	0	0	2	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0010	4386	1	0	1	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0011	4386	1	0	0	1	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0012	4386	1	0	0	1	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0013	4386	1	0	0	0	0	1	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0014	4386	1	0	0	0	0	1	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0015	4386	1	1	0	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0016	4386	1	0	0	0	0	1	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0017	4386	1	1	0	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0018	4386	1	0	0	1	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0019	4386	1	0	1	0	0	0	copy fasta	NEO1	chr15	73047463	73310205