JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEO1_chr15_73047463_73310205	0/0	c0020	4386	1	0	0	0	0	1	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0021	4386	1	1	0	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0022	4386	1	0	0	0	0	1	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0023	4386	1	1	0	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0024	4386	1	0	0	1	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEO1_chr15_73047463_73310205	0/0	c0025	4386	1	1	0	0	0	0	copy fasta	NEO1	chr15	73047463	73310205
NEPRO_chr3_112997444_113024671	0/1	c0001	1704	177	16	53	71	10	26	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	1/0	c0002	1704	158	43	16	82	2	14	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	c0003	1704	75	17	0	53	1	4	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	c0004	1704	18	14	3	0	1	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	c0005	1704	11	0	0	11	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	c0006	1704	3	0	0	1	0	2	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	c0007	1704	3	3	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	c0008	1704	2	2	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	c0009	1704	2	2	0	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	c0010	1704	2	1	1	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	c0011	1704	1	0	0	0	1	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	c0012	1704	1	0	1	0	0	0	copy fasta	NEPRO	chr3	112997444	113024671
NEPRO_chr3_112997444_113024671	0/0	c0013	1704	1	0	0	0	1	0	copy fasta	NEPRO	chr3	112997444	113024671
NES_chr1_156663763_156682407	0/0	c0001	4866	134	21	24	76	4	9	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0002	4866	92	3	13	57	6	13	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/1	c0003	4866	86	4	26	35	6	14	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0004	4866	17	16	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0005	4866	13	0	9	4	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0006	4866	10	10	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0007	4866	9	9	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0008	4866	9	2	2	0	1	4	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0009	4866	9	8	1	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0010	4866	8	0	0	8	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0011	4866	8	7	1	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0012	4866	5	0	3	0	0	2	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0013	4866	5	5	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0014	4866	4	0	3	0	1	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0015	4866	3	3	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0016	4866	2	2	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	1/0	c0017	4866	2	1	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0018	4866	1	0	1	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0019	4866	1	0	1	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0020	4866	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0021	4866	1	1	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0022	4866	1	1	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0023	4866	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0024	4866	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0025	4866	1	1	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0026	4866	1	0	0	0	0	1	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0027	4866	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0028	4866	1	1	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0029	4866	1	0	0	0	0	1	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0030	4866	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0031	4866	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407