JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NES_chr1_156663763_156682407	0/0	c0032	4866	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0033	4866	1	0	1	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0034	4866	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0035	4866	1	1	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0036	4866	1	1	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0037	4866	1	1	0	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0038	4866	1	0	1	0	0	0	copy fasta	NES	chr1	156663763	156682407
NES_chr1_156663763_156682407	0/0	c0039	4866	1	0	0	1	0	0	copy fasta	NES	chr1	156663763	156682407
NET1_chr10_5407557_5464056	0/1	c0001	1791	324	60	55	159	14	35	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	c0002	1791	18	0	1	15	0	2	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	c0003	1791	10	2	0	5	0	3	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	c0004	1791	6	6	0	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	1/0	c0005	1791	6	5	0	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	c0006	1791	5	0	5	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	c0007	1791	2	2	0	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	c0008	1791	1	1	0	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	c0009	1791	1	1	0	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	c0010	1791	1	0	0	1	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	c0011	1791	1	0	0	1	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	c0012	1791	1	1	0	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	c0013	1791	1	0	0	1	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	c0014	1791	1	0	0	1	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	c0015	1791	1	0	0	1	0	0	copy fasta	NET1	chr10	5407557	5464056
NET1_chr10_5407557_5464056	0/0	c0016	1791	1	0	1	0	0	0	copy fasta	NET1	chr10	5407557	5464056
NETO1_chr18_72738756_72872987	0/1	c0001	1602	329	79	63	136	14	36	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	1/0	c0002	1602	8	7	0	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	c0003	1602	5	4	1	0	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	c0004	1602	3	0	0	3	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	c0005	1602	1	0	0	1	0	0	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	c0006	1602	1	0	0	0	0	1	copy fasta	NETO1	chr18	72738756	72872987
NETO1_chr18_72738756_72872987	0/0	c0007	1602	1	0	0	0	0	1	copy fasta	NETO1	chr18	72738756	72872987
NETO2_chr16_47072703_47148945	1/1	c0001	1578	160	75	30	27	6	20	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	c0002	1578	7	7	0	0	0	0	copy fasta	NETO2	chr16	47072703	47148945
NETO2_chr16_47072703_47148945	0/0	c0003	1578	1	0	0	1	0	0	copy fasta	NETO2	chr16	47072703	47148945
NEU1_chr6_31852659_31867821	0/1	c0001	1248	406	83	80	181	18	43	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	c0002	1248	9	9	0	0	0	0	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	c0003	1248	3	0	0	0	0	3	copy fasta	NEU1	chr6	31852659	31867821
NEU1_chr6_31852659_31867821	0/0	c0004	1248	1	0	0	1	0	0	copy fasta	NEU1	chr6	31852659	31867821
NEU2_chr2_233027672_233040057	1/0	c0001	1143	258	44	33	145	8	27	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/1	c0002	1143	70	25	21	1	8	14	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0003	1143	46	18	16	4	1	7	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0004	1143	29	0	3	25	0	1	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0005	1143	24	0	2	22	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0006	1143	5	5	0	0	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0007	1143	4	0	0	4	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0008	1143	4	0	0	4	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0009	1143	2	2	0	0	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0010	1143	1	0	0	1	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0011	1143	1	0	0	1	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0012	1143	1	0	0	1	0	0	copy fasta	NEU2	chr2	233027672	233040057