JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEU2_chr2_233027672_233040057	0/0	c0013	1143	1	0	1	0	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0014	1143	1	0	0	0	0	1	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0015	1143	1	0	0	1	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0016	1143	1	1	0	0	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0017	1143	1	1	0	0	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0018	1143	1	0	1	0	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0019	1143	1	0	1	0	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0020	1143	1	0	0	0	1	0	copy fasta	NEU2	chr2	233027672	233040057
NEU2_chr2_233027672_233040057	0/0	c0021	1143	1	0	0	1	0	0	copy fasta	NEU2	chr2	233027672	233040057
NEU3_chr11_74983933_75015907	0/1	c0001	1386	234	42	44	116	8	23	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	1/0	c0002	1386	129	41	15	51	5	16	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	c0003	1386	9	9	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	c0004	1386	6	1	2	0	2	1	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	c0005	1386	2	2	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	c0006	1386	2	0	1	0	0	1	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	c0007	1386	2	0	0	2	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	c0008	1386	2	0	0	2	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	c0009	1386	2	0	1	0	0	1	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	c0010	1386	1	1	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	c0011	1386	1	0	0	1	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	c0012	1386	1	0	1	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	c0013	1386	1	1	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	c0014	1386	1	1	0	0	0	0	copy fasta	NEU3	chr11	74983933	75015907
NEU3_chr11_74983933_75015907	0/0	c0015	1386	1	0	0	0	1	0	copy fasta	NEU3	chr11	74983933	75015907
NEU4_chr2_241804193_241822413	0/0	c0001	1455	117	20	30	58	2	7	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/1	c0002	1455	64	11	10	24	3	15	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0003	1455	59	14	16	11	8	10	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0004	1455	48	21	7	19	0	1	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0005	1455	8	6	0	2	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0006	1455	4	0	2	0	1	1	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0007	1455	3	3	0	0	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0008	1455	2	0	0	2	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0009	1455	2	0	0	2	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0010	1455	1	0	0	1	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0011	1438	1	0	0	0	1	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0012	1455	1	0	0	1	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0013	1455	1	1	0	0	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0014	1455	1	1	0	0	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0015	1455	1	0	1	0	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0016	1455	1	0	0	1	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0017	1455	1	1	0	0	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0018	1455	1	1	0	0	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0019	1455	1	0	0	0	1	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0020	1455	1	1	0	0	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEU4_chr2_241804193_241822413	0/0	c0021	1455	1	0	0	1	0	0	copy fasta	NEU4	chr2	241804193	241822413
NEURL1B_chr5_172636263_172696540	1/1	c0001	1668	304	59	59	142	14	28	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	c0002	1668	31	7	9	8	2	5	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	c0003	1668	21	0	5	13	2	1	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	c0004	1668	20	15	1	2	0	2	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	c0005	1668	5	5	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540