JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEURL1B_chr5_172636263_172696540	0/0	c0006	1668	2	2	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	c0007	1668	2	2	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	c0008	1668	1	0	0	1	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	c0009	1668	1	0	0	1	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	c0010	1668	1	0	0	1	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	c0011	1668	1	0	0	1	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	c0012	1668	1	1	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	c0013	1668	1	0	0	1	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1B_chr5_172636263_172696540	0/0	c0014	1668	1	1	0	0	0	0	copy fasta	NEURL1B	chr5	172636263	172696540
NEURL1_chr10_103488705_103597546	1/0	c0001	1725	132	36	30	42	7	16	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/1	c0002	1725	119	36	24	41	3	14	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	c0003	1725	36	4	9	9	2	12	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	c0004	1725	9	0	0	9	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	c0005	1725	8	8	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	c0006	1725	2	0	0	2	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	c0007	1725	1	1	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	c0008	1725	1	1	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	c0009	1725	1	1	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	c0010	1725	1	0	0	1	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	c0011	1725	1	0	1	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL1_chr10_103488705_103597546	0/0	c0012	1725	1	1	0	0	0	0	copy fasta	NEURL1	chr10	103488705	103597546
NEURL2_chr20_45883634_45896208	1/1	c0001	858	404	77	67	198	16	44	copy fasta	NEURL2	chr20	45883634	45896208
NEURL2_chr20_45883634_45896208	0/0	c0002	858	11	10	1	0	0	0	copy fasta	NEURL2	chr20	45883634	45896208
NEURL2_chr20_45883634_45896208	0/0	c0003	858	5	5	0	0	0	0	copy fasta	NEURL2	chr20	45883634	45896208
NEURL3_chr2_96492646_96510357	0/0	c0001	789	210	34	51	88	5	32	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	1/1	c0002	789	92	37	11	27	9	6	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	c0003	789	80	17	5	54	0	4	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	c0004	789	4	4	0	0	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	c0005	789	2	0	2	0	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	c0006	789	1	1	0	0	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	c0007	789	1	0	1	0	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	c0008	789	1	0	0	1	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	c0009	789	1	0	0	1	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	c0010	789	1	1	0	0	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL3_chr2_96492646_96510357	0/0	c0011	789	1	0	0	1	0	0	copy fasta	NEURL3	chr2	96492646	96510357
NEURL4_chr17_7310628_7334335	0/0	c0001	4689	120	27	20	63	3	7	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0002	4689	89	2	20	58	2	7	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	1/1	c0003	4689	67	32	8	15	2	8	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0004	4689	51	0	15	24	1	11	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0005	4689	12	11	1	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0006	4689	9	9	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0007	4689	5	0	0	5	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0008	4689	4	0	3	0	0	1	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0009	4689	4	1	1	1	0	1	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0010	4689	3	0	3	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0011	4689	2	2	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0012	4689	2	0	0	0	0	2	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0013	4689	2	2	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0014	4689	2	0	0	2	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0015	4689	2	0	2	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335