JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEURL4_chr17_7310628_7334335	0/0	c0016	4689	2	0	0	2	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0017	4689	2	0	2	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0018	4689	1	0	0	0	0	1	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0019	4689	1	0	1	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0020	4689	1	0	0	0	1	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0021	4689	1	1	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0022	4689	1	0	1	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0023	4689	1	0	0	1	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0024	4689	1	0	0	0	0	1	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0025	4689	1	0	1	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0026	4689	1	0	0	1	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0027	4689	1	0	0	0	1	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0028	4689	1	0	1	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0029	4689	1	0	1	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0030	4689	1	1	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0031	4689	1	0	0	1	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0032	4689	1	1	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0033	4689	1	0	0	1	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0034	4689	1	0	0	0	0	1	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0035	4689	1	0	0	1	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0036	4689	1	1	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0037	4689	1	0	1	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0038	4689	1	0	0	1	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0039	4689	1	0	0	0	0	1	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0040	4689	1	1	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0041	4689	1	1	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0042	4689	1	1	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0043	4689	1	0	0	0	0	1	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0044	4689	1	0	0	1	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0045	4689	1	1	0	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0046	4689	1	0	1	0	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEURL4_chr17_7310628_7334335	0/0	c0047	4689	1	0	0	1	0	0	copy fasta	NEURL4	chr17	7310628	7334335
NEUROD1_chr2_181671467_181685517	0/0	c0001	1071	294	65	54	138	9	28	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	1/1	c0002	1071	76	24	20	16	7	7	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	c0003	1071	3	1	0	0	0	2	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	c0004	1071	2	2	0	0	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	c0005	1071	2	0	2	0	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	c0006	1071	1	0	0	1	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	c0007	1071	1	0	0	0	0	1	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD1_chr2_181671467_181685517	0/0	c0008	1071	1	0	0	1	0	0	copy fasta	NEUROD1	chr2	181671467	181685517
NEUROD2_chr17_39598768_39612920	1/1	c0001	1149	348	86	75	126	16	43	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	c0002	1149	7	6	1	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	c0003	1149	1	1	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	c0004	1149	1	0	0	1	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	c0005	1149	1	0	0	1	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	c0006	1149	1	1	0	0	0	0	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD2_chr17_39598768_39612920	0/0	c0007	1149	1	0	0	0	0	1	copy fasta	NEUROD2	chr17	39598768	39612920
NEUROD4_chr12_55014974_55035017	1/1	c0001	996	415	92	76	190	16	39	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	c0002	996	2	0	2	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	c0003	996	2	0	0	2	0	0	copy fasta	NEUROD4	chr12	55014974	55035017