JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEUROD4_chr12_55014974_55035017	0/0	c0004	996	1	0	1	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	c0005	996	1	0	0	0	0	1	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	c0006	996	1	0	1	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	c0007	996	1	1	0	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD4_chr12_55014974_55035017	0/0	c0008	996	1	1	0	0	0	0	copy fasta	NEUROD4	chr12	55014974	55035017
NEUROD6_chr7_31332465_31345726	1/1	c0001	1014	413	92	80	175	18	46	copy fasta	NEUROD6	chr7	31332465	31345726
NEUROD6_chr7_31332465_31345726	0/0	c0002	1014	1	0	0	1	0	0	copy fasta	NEUROD6	chr7	31332465	31345726
NEUROG1_chr5_135529282_135540964	1/1	c0001	714	394	91	71	170	16	44	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG1_chr5_135529282_135540964	0/0	c0002	714	9	0	7	0	0	2	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG1_chr5_135529282_135540964	0/0	c0003	714	2	1	1	0	0	0	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG1_chr5_135529282_135540964	0/0	c0004	714	2	2	0	0	0	0	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG1_chr5_135529282_135540964	0/0	c0005	714	1	0	1	0	0	0	copy fasta	NEUROG1	chr5	135529282	135540964
NEUROG2_chr4_112508516_112521180	0/0	c0001	819	401	88	71	194	12	36	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	1/1	c0002	819	11	2	3	0	4	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	c0003	819	11	0	0	11	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	c0004	819	3	3	0	0	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	c0005	819	1	1	0	0	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	c0006	819	1	1	0	0	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	c0007	819	1	0	0	1	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	c0008	819	1	0	0	1	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	c0009	819	1	1	0	0	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG2_chr4_112508516_112521180	0/0	c0010	819	1	0	0	1	0	0	copy fasta	NEUROG2	chr4	112508516	112521180
NEUROG3_chr10_69566698_69578422	1/1	c0001	645	266	65	27	140	1	31	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	c0002	645	168	29	47	58	15	19	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	c0003	645	8	1	5	0	2	0	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	c0004	645	1	1	0	0	0	0	copy fasta	NEUROG3	chr10	69566698	69578422
NEUROG3_chr10_69566698_69578422	0/0	c0005	645	1	0	1	0	0	0	copy fasta	NEUROG3	chr10	69566698	69578422
NEXMIF_chrX_74727856_74930452	1/1	c0001	4551	200	59	39	69	6	25	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	c0002	4551	6	0	3	0	1	2	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	c0003	4551	3	0	0	3	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	c0004	4551	2	2	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	c0005	4551	2	0	1	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	c0006	4551	1	1	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	c0007	4552	1	0	0	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	c0008	4551	1	0	0	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	c0009	4551	1	0	0	0	0	1	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	c0010	4551	1	0	0	0	0	1	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	c0011	4551	1	1	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	c0012	4551	1	0	1	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	c0013	4551	1	0	0	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	c0014	4551	1	0	0	0	0	1	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	c0015	4551	1	1	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	c0016	4551	1	0	0	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXN_chr1_77883624_77948895	1/1	c0001	2028	223	65	50	65	8	33	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	c0002	2028	33	0	9	19	4	1	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	c0003	2028	6	6	0	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	c0004	2028	1	1	0	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	c0005	2028	1	0	0	1	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	c0006	2028	1	0	0	1	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	c0007	2028	1	0	1	0	0	0	copy fasta	NEXN	chr1	77883624	77948895