JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEXN_chr1_77883624_77948895	0/0	c0008	2028	1	1	0	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	c0009	2028	1	1	0	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NF1_chr17_31089977_31382675	0/0	c0001	8520	118	47	10	48	4	9	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/1	c0002	8520	79	5	17	43	4	9	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0003	8520	10	4	6	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0004	8520	7	7	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0005	8520	5	0	0	5	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0006	8520	4	0	4	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	1/0	c0007	8520	4	1	2	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0008	8520	3	3	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0009	8520	3	0	0	3	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0010	8520	2	0	0	2	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0011	8520	2	2	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0012	8520	2	2	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0013	8520	2	0	0	2	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0014	8520	1	0	0	1	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0015	8520	1	0	0	0	0	1	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0016	8520	1	0	0	1	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0017	8520	1	0	0	1	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0018	8520	1	0	1	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0019	8520	1	0	1	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0020	8520	1	0	1	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0021	8520	1	1	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0022	8520	1	1	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0023	8520	1	1	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	c0024	8520	1	0	0	0	0	1	copy fasta	NF1	chr17	31089977	31382675
NF2_chr22_29598633_29703598	1/1	c0001	1788	331	87	62	129	16	35	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	c0002	1788	8	0	0	8	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	c0003	1788	1	0	0	0	0	1	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	c0004	1788	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	c0005	1788	1	0	0	1	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	c0006	1788	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	c0007	1788	1	1	0	0	0	0	copy fasta	NF2	chr22	29598633	29703598
NFAM1_chr22_42375407_42437403	1/1	c0001	813	289	40	53	143	14	37	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0002	813	30	21	5	1	0	3	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0003	813	26	7	12	0	2	5	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0004	813	10	10	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0005	813	8	5	3	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0006	813	5	5	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0007	813	4	3	1	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0008	813	2	2	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0009	813	2	2	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0010	813	1	0	0	0	0	1	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0011	813	1	0	0	0	0	1	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0012	813	1	0	0	0	0	1	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0013	813	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0014	813	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0015	813	1	0	1	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0016	813	1	0	1	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	c0017	813	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403