JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NFASC_chr1_204823652_205027822	0/0	c0001	3723	46	7	13	19	1	6	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	1/0	c0002	3723	37	20	8	7	0	1	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0003	3723	30	1	6	20	0	3	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/1	c0004	3723	23	5	8	7	2	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0005	3723	9	6	2	0	1	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0006	3723	6	1	0	5	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0007	3723	4	0	0	2	0	2	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0008	3723	4	2	0	2	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0009	3723	4	4	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0010	3723	4	3	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0011	3723	4	4	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0012	3723	3	0	3	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0013	3723	3	0	2	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0014	3723	3	0	0	0	0	3	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0015	3723	3	3	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0016	3723	2	2	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0017	3723	2	0	2	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0018	3723	2	2	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0019	3723	2	2	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0020	3723	2	1	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0021	3723	2	0	2	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0022	3723	2	0	2	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0023	3723	2	2	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0024	3723	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0025	3723	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0026	3723	1	0	0	0	0	1	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0027	3723	1	0	0	0	0	1	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0028	3723	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0029	3723	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0030	3723	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0031	3723	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0032	3723	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0033	3723	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0034	3723	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0035	3723	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0036	3723	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0037	3723	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0038	3723	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0039	3723	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0040	3723	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0041	3723	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0042	3723	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0043	3723	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0044	3723	1	0	0	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0045	3723	1	0	0	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0046	3723	1	0	0	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0047	3723	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0048	3723	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0049	3723	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	c0050	3723	1	0	0	0	0	1	copy fasta	NFASC	chr1	204823652	205027822