JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NFASC_chr1_204865862_205027822	0/0	c0001	3570	97	12	17	42	5	21	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	1/1	c0002	3570	87	38	17	24	3	3	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0003	3570	21	15	4	0	2	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0004	3570	11	0	7	2	1	1	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0005	3570	9	9	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0006	3570	6	5	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0007	3570	3	0	1	0	0	2	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0008	3570	3	0	3	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0009	3570	3	0	0	0	0	3	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0010	3570	3	0	2	0	0	1	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0011	3570	2	2	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0012	3570	2	0	2	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0013	3570	2	0	0	2	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0014	3570	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0015	3570	1	0	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0016	3570	1	0	0	0	1	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0017	3570	1	0	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0018	3570	1	0	0	1	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0019	3570	1	0	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0020	3570	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0021	3570	1	0	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0022	3570	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0023	3570	1	0	0	1	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0024	3570	1	0	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0025	3570	1	0	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0026	3570	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0027	3570	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	c0028	3570	1	0	0	0	0	1	copy fasta	NFASC	chr1	204865862	205027822
NFAT5_chr16_69560966_69709654	1/1	c0001	4650	344	72	59	163	14	34	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	c0002	4650	19	19	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	c0003	4650	4	0	2	0	2	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	c0004	4650	3	0	0	0	2	1	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	c0005	4650	3	0	0	3	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	c0006	4650	2	0	0	2	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	c0007	4650	1	1	0	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	c0008	4650	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	c0009	4650	1	0	0	1	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	c0010	4650	1	0	1	0	0	0	copy fasta	NFAT5	chr16	69560966	69709654
NFAT5_chr16_69560966_69709654	0/0	c0011	4650	1	0	0	0	0	1	copy fasta	NFAT5	chr16	69560966	69709654
NFATC1_chr18_79390930_79534323	0/1	c0001	2832	63	2	15	31	1	13	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0002	2832	40	3	3	33	1	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0003	2832	29	0	16	4	2	7	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	1/0	c0004	2832	21	3	7	7	1	2	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0005	2832	14	14	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0006	2832	13	2	1	8	0	2	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0007	2832	12	2	7	0	3	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0008	2832	11	4	0	1	0	6	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0009	2832	10	6	0	2	1	1	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0010	2832	8	6	2	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0011	2832	8	4	1	0	3	0	copy fasta	NFATC1	chr18	79390930	79534323