JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APC_chr5_112732885_112851239	0/0	c0005	8532	8	8	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0006	8532	3	1	1	0	0	1	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0007	8532	3	1	2	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0008	8532	3	3	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0009	8529	3	2	1	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0010	8532	2	2	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0011	8532	2	0	0	0	0	2	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0012	8532	2	2	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0013	8532	2	2	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0014	8532	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0015	8532	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0016	8532	1	0	0	1	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0017	8532	1	0	0	1	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0018	8532	1	0	0	1	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0019	8532	1	0	0	1	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0020	8532	1	0	0	1	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0021	8532	1	0	0	1	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0022	8532	1	0	0	1	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0023	8532	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0024	8532	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0025	8532	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0026	8532	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0027	8532	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0028	8532	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0029	8532	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0030	8532	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0031	8532	1	0	1	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	c0032	8532	1	0	0	0	0	1	copy fasta	APC	chr5	112732885	112851239
APEH_chr3_49669351_49688971	1/1	c0001	2199	230	68	43	83	10	24	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	c0002	2199	74	18	20	19	8	9	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	c0003	2199	4	0	0	4	0	0	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	c0004	2199	3	3	0	0	0	0	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	c0005	2199	2	2	0	0	0	0	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	c0006	2199	2	0	0	2	0	0	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	c0007	2199	1	1	0	0	0	0	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	c0008	2199	1	0	1	0	0	0	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	c0009	2199	1	0	0	0	0	1	copy fasta	APEH	chr3	49669351	49688971
APELA_chr4_164872178_164902527	0/0	c0001	165	266	59	45	119	11	32	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	1/1	c0002	165	162	34	28	75	7	16	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	c0003	165	3	3	0	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APELA_chr4_164872178_164902527	0/0	c0004	165	3	2	1	0	0	0	copy fasta	APELA	chr4	164872178	164902527
APEX1_chr14_20450226_20462767	1/1	c0001	957	297	64	44	145	9	33	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	c0002	957	151	26	34	73	9	9	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	c0003	957	8	1	1	6	0	0	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	c0004	957	7	0	0	7	0	0	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	c0005	957	3	3	0	0	0	0	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	c0006	957	1	0	0	1	0	0	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	c0007	957	1	0	1	0	0	0	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	c0008	957	1	0	0	0	0	1	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	c0009	957	1	0	0	0	0	1	copy fasta	APEX1	chr14	20450226	20462767