JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NFATC1_chr18_79390930_79534323	0/0	c0012	2832	8	0	6	1	0	1	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0013	2832	6	5	1	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0014	2832	5	5	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0015	2832	5	1	0	1	1	2	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0016	2832	4	0	4	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0017	2832	4	1	0	2	0	1	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0018	2832	4	4	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0019	2832	3	3	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0020	2832	3	0	0	3	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0021	2832	3	2	0	0	0	1	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0022	2832	3	0	3	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0023	2832	3	3	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0024	2832	3	1	0	0	1	1	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0025	2832	2	2	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0026	2832	2	0	2	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0027	2832	2	1	1	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0028	2832	2	1	1	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0029	2832	2	0	0	0	0	2	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0030	2832	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0031	2832	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0032	2832	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0033	2832	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0034	2832	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0035	2832	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0036	2832	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0037	2832	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0038	2832	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0039	2832	1	0	1	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0040	2832	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0041	2832	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0042	2832	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0043	2832	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0044	2832	1	0	1	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0045	2832	1	0	1	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0046	2832	1	0	0	1	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0047	2832	1	0	1	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0048	2832	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0049	2832	1	0	0	0	0	1	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0050	2832	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0051	2832	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0052	2832	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0053	2832	1	0	0	0	0	1	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0054	2832	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0055	2832	1	0	1	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0056	2832	1	1	0	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0057	2832	1	0	0	0	0	1	copy fasta	NFATC1	chr18	79390930	79534323
NFATC1_chr18_79390930_79534323	0/0	c0058	2832	1	0	1	0	0	0	copy fasta	NFATC1	chr18	79390930	79534323
NFATC2IP_chr16_28945937_28972092	1/1	c0001	1260	354	66	64	175	16	31	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	c0002	1260	34	17	0	9	0	8	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	c0003	1260	3	0	0	3	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092