JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NFATC2IP_chr16_28945937_28972092	0/0	c0004	1260	1	1	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	c0005	1260	1	0	0	1	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	c0006	1260	1	0	0	0	0	1	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	c0007	1260	1	1	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2IP_chr16_28945937_28972092	0/0	c0008	1260	1	1	0	0	0	0	copy fasta	NFATC2IP	chr16	28945937	28972092
NFATC2_chr20_51381963_51547719	0/0	c0001	2766	140	40	32	45	4	19	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	1/1	c0002	2766	115	18	25	47	5	18	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0003	2766	17	15	2	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0004	2766	9	2	1	6	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0005	2766	9	2	0	4	1	2	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0006	2766	5	1	0	4	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0007	2766	4	4	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0008	2766	3	0	0	3	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0009	2766	2	2	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0010	2766	2	2	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0011	2766	1	0	0	1	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0012	2766	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0013	2766	1	0	0	1	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0014	2766	1	0	1	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0015	2766	1	0	0	1	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0016	2766	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0017	2766	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0018	2766	1	0	0	0	0	1	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0019	2766	1	1	0	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC2_chr20_51381963_51547719	0/0	c0020	2766	1	0	1	0	0	0	copy fasta	NFATC2	chr20	51381963	51547719
NFATC3_chr16_68080370_68234259	1/1	c0001	3228	171	72	30	41	4	22	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	c0002	3228	4	4	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	c0003	3228	3	3	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	c0004	3228	3	1	2	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	c0005	3228	2	0	0	2	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	c0006	3228	1	0	0	1	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	c0007	3228	1	1	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	c0008	3228	1	0	1	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	c0009	3228	1	0	1	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC3_chr16_68080370_68234259	0/0	c0010	3228	1	1	0	0	0	0	copy fasta	NFATC3	chr16	68080370	68234259
NFATC4_chr14_24363184_24384601	0/0	c0001	2709	150	23	27	79	4	17	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	1/0	c0002	2709	105	33	10	53	2	6	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0003	2709	86	7	21	38	8	12	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/1	c0004	2709	16	4	6	0	1	4	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0005	2709	6	0	4	1	0	1	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0006	2709	4	4	0	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0007	2709	4	4	0	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0008	2709	4	0	0	4	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0009	2709	3	3	0	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0010	2709	2	2	0	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0011	2709	2	0	0	2	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0012	2709	1	1	0	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0013	2709	1	0	1	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0014	2709	1	0	1	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0015	2709	1	0	0	1	0	0	copy fasta	NFATC4	chr14	24363184	24384601