JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NFATC4_chr14_24363184_24384601	0/0	c0016	2709	1	0	0	1	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0017	2709	1	1	0	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0018	2709	1	1	0	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0019	2709	1	0	0	1	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0020	2709	1	1	0	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0021	2709	1	0	1	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0022	2709	1	0	0	0	1	0	copy fasta	NFATC4	chr14	24363184	24384601
NFATC4_chr14_24363184_24384601	0/0	c0023	2709	1	0	1	0	0	0	copy fasta	NFATC4	chr14	24363184	24384601
NFE2L1_chr17_48043359_48066545	1/1	c0001	2319	344	88	64	142	17	31	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	c0002	2319	36	1	1	30	0	4	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	c0003	2319	4	0	0	4	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	c0004	2319	4	3	1	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	c0005	2319	3	0	1	0	0	2	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	c0006	2319	3	0	0	3	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	c0007	2319	2	0	0	0	0	2	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	c0008	2319	1	0	0	0	1	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	c0009	2319	1	0	0	1	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	c0010	2319	1	0	0	0	0	1	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L1_chr17_48043359_48066545	0/0	c0011	2319	1	0	1	0	0	0	copy fasta	NFE2L1	chr17	48043359	48066545
NFE2L2_chr2_177225308_177269727	1/1	c0001	1818	319	90	69	120	14	24	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	c0002	1818	2	2	0	0	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	c0003	1818	2	2	0	0	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	c0004	1818	1	0	0	1	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	c0005	1818	1	0	1	0	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L2_chr2_177225308_177269727	0/0	c0006	1818	1	0	0	1	0	0	copy fasta	NFE2L2	chr2	177225308	177269727
NFE2L3_chr7_26147198_26192137	1/1	c0001	2085	209	28	49	83	13	34	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0002	2085	147	47	17	75	1	7	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0003	2085	10	0	0	10	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0004	2088	8	5	3	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0005	2085	3	0	0	3	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0006	2085	3	3	0	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0007	2088	3	1	1	0	0	1	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0008	2085	2	0	0	2	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0009	2085	2	0	0	2	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0010	2085	2	0	0	2	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0011	2085	2	0	0	0	0	2	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0012	2085	2	2	0	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0013	2085	1	0	0	1	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0014	2085	1	0	1	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0015	2085	1	0	0	1	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0016	2085	1	0	0	1	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0017	2085	1	1	0	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0018	2085	1	1	0	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2L3_chr7_26147198_26192137	0/0	c0019	2085	1	0	1	0	0	0	copy fasta	NFE2L3	chr7	26147198	26192137
NFE2_chr12_54287111_54306015	1/1	c0001	1122	343	95	75	119	16	36	copy fasta	NFE2	chr12	54287111	54306015
NFE2_chr12_54287111_54306015	0/0	c0002	1122	1	1	0	0	0	0	copy fasta	NFE2	chr12	54287111	54306015
NFE2_chr12_54287111_54306015	0/0	c0003	1122	1	0	1	0	0	0	copy fasta	NFE2	chr12	54287111	54306015
NFE2_chr12_54287111_54306015	0/0	c0004	1122	1	0	0	1	0	0	copy fasta	NFE2	chr12	54287111	54306015
NFIA_chr1_61077561_61467788	1/1	c0001	1530	84	39	12	19	5	7	copy fasta	NFIA	chr1	61077561	61467788
NFIA_chr1_61077561_61467788	0/0	c0002	1530	68	22	10	30	1	5	copy fasta	NFIA	chr1	61077561	61467788