JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NFIA_chr1_61077561_61467788	0/0	c0003	1530	2	2	0	0	0	0	copy fasta	NFIA	chr1	61077561	61467788
NFIA_chr1_61077561_61467788	0/0	c0004	1530	1	0	0	1	0	0	copy fasta	NFIA	chr1	61077561	61467788
NFIA_chr1_61077561_61467788	0/0	c0005	1530	1	1	0	0	0	0	copy fasta	NFIA	chr1	61077561	61467788
NFIB_chr9_14076848_14319141	1/1	c0001	1485	297	86	57	120	6	26	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	c0002	1485	2	0	0	2	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	c0003	1485	2	0	0	0	0	2	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	c0004	1485	1	0	0	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	c0005	1485	1	0	1	0	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIB_chr9_14076848_14319141	0/0	c0006	1506	1	0	0	1	0	0	copy fasta	NFIB	chr9	14076848	14319141
NFIC_chr19_3361583_3474217	1/1	c0001	1527	254	47	60	92	16	37	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	c0002	1527	26	25	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	c0003	1527	18	17	0	0	0	1	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	c0004	1527	1	0	1	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIC_chr19_3361583_3474217	0/0	c0005	1527	1	1	0	0	0	0	copy fasta	NFIC	chr19	3361583	3474217
NFIL3_chr9_91404045_91428832	1/1	c0001	1389	407	75	73	199	17	41	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	c0002	1389	27	1	3	18	1	4	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	c0003	1389	5	5	0	0	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	c0004	1389	3	2	1	0	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	c0005	1389	2	0	2	0	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	c0006	1389	2	2	0	0	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	c0007	1389	2	2	0	0	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	c0008	1389	1	0	0	0	0	1	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	c0009	1389	1	0	0	1	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	c0010	1389	1	0	1	0	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	c0011	1389	1	0	1	0	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	c0012	1389	1	1	0	0	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFIL3_chr9_91404045_91428832	0/0	c0013	1389	1	0	1	0	0	0	copy fasta	NFIL3	chr9	91404045	91428832
NFILZ_chr19_8625633_8686151	1/0	c0001	870	221	53	39	100	7	21	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/1	c0002	870	77	9	20	32	4	11	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	c0003	870	38	0	10	19	3	6	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	c0004	870	6	6	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	c0005	870	5	5	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	c0006	870	5	4	1	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	c0007	870	3	0	3	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	c0008	870	2	0	1	0	1	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	c0009	870	2	2	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	c0010	870	2	2	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	c0011	870	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	c0012	870	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	c0013	870	1	0	0	1	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	c0014	916	1	0	0	0	1	0	copy fasta	NFILZ	chr19	8625633	8686151
NFILZ_chr19_8625633_8686151	0/0	c0015	870	1	1	0	0	0	0	copy fasta	NFILZ	chr19	8625633	8686151
NFIX_chr19_12990475_13103796	1/1	c0001	1509	250	80	64	62	6	36	copy fasta	NFIX	chr19	12990475	13103796
NFIX_chr19_12990475_13103796	0/0	c0002	1509	2	0	0	0	0	2	copy fasta	NFIX	chr19	12990475	13103796
NFKB1_chr4_102496359_102622302	0/0	c0001	2910	303	66	52	135	12	38	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	c0002	2910	10	10	0	0	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	c0003	2910	5	4	1	0	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	1/1	c0004	2910	5	0	3	0	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	c0005	2910	2	2	0	0	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	c0006	2910	1	1	0	0	0	0	copy fasta	NFKB1	chr4	102496359	102622302