JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NFKB1_chr4_102496359_102622302	0/0	c0007	2910	1	0	0	1	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB1_chr4_102496359_102622302	0/0	c0008	2910	1	1	0	0	0	0	copy fasta	NFKB1	chr4	102496359	102622302
NFKB2_chr10_102390705_102407524	0/1	c0001	2703	374	85	75	158	15	40	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	c0002	2703	12	1	1	7	1	2	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	c0003	2703	10	0	0	10	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	1/0	c0004	2703	7	6	0	0	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	c0005	2703	7	0	0	7	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	c0006	2703	2	2	0	0	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	c0007	2703	2	0	0	2	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	c0008	2698	1	0	0	1	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	c0009	2703	1	0	0	1	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	c0010	2703	1	1	0	0	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	c0011	2723	1	0	0	1	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	c0012	2703	1	0	0	1	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	c0013	2703	1	0	0	1	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	c0014	2703	1	0	0	1	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	c0015	2703	1	0	0	1	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	c0016	2703	1	1	0	0	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKB2_chr10_102390705_102407524	0/0	c0017	2703	1	0	0	1	0	0	copy fasta	NFKB2	chr10	102390705	102407524
NFKBIA_chr14_35396513_35409749	1/1	c0001	954	296	78	47	143	8	18	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	c0002	954	118	16	19	61	5	17	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	c0003	954	39	4	12	9	5	9	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	c0004	954	4	0	0	4	0	0	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	c0005	954	2	0	2	0	0	0	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	c0006	954	2	2	0	0	0	0	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIA_chr14_35396513_35409749	0/0	c0007	987	1	0	0	1	0	0	copy fasta	NFKBIA	chr14	35396513	35409749
NFKBIB_chr19_38894969_38913889	1/1	c0001	1071	432	92	81	193	16	48	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIB_chr19_38894969_38913889	0/0	c0002	1071	6	0	0	6	0	0	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIB_chr19_38894969_38913889	0/0	c0003	1071	5	5	0	0	0	0	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIB_chr19_38894969_38913889	0/0	c0004	1071	4	0	0	4	0	0	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIB_chr19_38894969_38913889	0/0	c0005	1071	2	0	0	2	0	0	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIB_chr19_38894969_38913889	0/0	c0006	1071	1	0	0	1	0	0	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIB_chr19_38894969_38913889	0/0	c0007	1071	1	0	1	0	0	0	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIB_chr19_38894969_38913889	0/0	c0008	1071	1	0	0	1	0	0	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIB_chr19_38894969_38913889	0/0	c0009	1071	1	0	0	1	0	0	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIB_chr19_38894969_38913889	0/0	c0010	1071	1	1	0	0	0	0	copy fasta	NFKBIB	chr19	38894969	38913889
NFKBIE_chr6_44253166_44270551	1/1	c0001	1086	389	87	75	168	14	43	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	c0002	1086	54	0	3	50	1	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	c0003	1086	2	2	0	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	c0004	1086	2	2	0	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	c0005	1086	2	0	0	0	2	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	c0006	1086	1	0	0	1	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	c0007	1086	1	1	0	0	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	c0008	1086	1	0	0	0	0	1	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	c0009	1086	1	0	0	0	1	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIE_chr6_44253166_44270551	0/0	c0010	1086	1	0	0	1	0	0	copy fasta	NFKBIE	chr6	44253166	44270551
NFKBIL1_chr6_31542608_31563829	0/1	c0001	1146	362	89	72	143	17	40	copy fasta	NFKBIL1	chr6	31542608	31563829
NFKBIL1_chr6_31542608_31563829	0/0	c0002	1146	80	6	11	57	0	6	copy fasta	NFKBIL1	chr6	31542608	31563829
NFKBIL1_chr6_31542608_31563829	0/0	c0003	1146	3	0	3	0	0	0	copy fasta	NFKBIL1	chr6	31542608	31563829
NFKBIL1_chr6_31542608_31563829	0/0	c0004	1146	2	1	0	0	1	0	copy fasta	NFKBIL1	chr6	31542608	31563829