JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NFKBIL1_chr6_31542608_31563829	0/0	c0005	1146	1	0	0	1	0	0	copy fasta	NFKBIL1	chr6	31542608	31563829
NFKBIL1_chr6_31542608_31563829	0/0	c0006	1120	1	0	0	1	0	0	copy fasta	NFKBIL1	chr6	31542608	31563829
NFKBIZ_chr3_101844514_101866022	0/1	c0001	2157	195	39	42	80	7	26	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	1/0	c0002	2157	181	34	29	98	7	12	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	c0003	2157	13	11	2	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	c0004	2157	10	9	1	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	c0005	2157	2	0	0	2	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	c0006	2157	1	0	1	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	c0007	2157	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	c0008	2157	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	c0009	2157	1	1	0	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	c0010	2157	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	c0011	2157	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	c0012	2157	1	0	1	0	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	c0013	2157	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFKBIZ_chr3_101844514_101866022	0/0	c0014	2157	1	0	0	1	0	0	copy fasta	NFKBIZ	chr3	101844514	101866022
NFRKB_chr11_129858636_129900578	0/1	c0001	3900	164	58	31	55	7	12	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	1/0	c0002	3900	86	0	16	54	6	9	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0003	3900	73	8	13	50	0	2	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0004	3900	52	18	8	17	3	6	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0005	3900	5	5	0	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0006	3900	4	0	3	0	0	1	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0007	3900	3	3	0	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0008	3900	2	0	0	2	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0009	3900	2	0	0	2	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0010	3900	2	0	0	0	0	2	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0011	3900	1	1	0	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0012	3900	1	0	1	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0013	3889	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0014	3900	1	1	0	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0015	3900	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0016	3900	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0017	3900	1	1	0	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0018	3900	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0019	3900	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0020	3900	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0021	3900	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0022	3900	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0023	3900	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0024	3900	1	0	0	0	0	1	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0025	3900	1	0	0	1	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0026	3900	1	0	0	0	0	1	copy fasta	NFRKB	chr11	129858636	129900578
NFRKB_chr11_129858636_129900578	0/0	c0027	3900	1	1	0	0	0	0	copy fasta	NFRKB	chr11	129858636	129900578
NFS1_chr20_35663052_35704352	1/1	c0001	1374	263	82	44	91	14	30	copy fasta	NFS1	chr20	35663052	35704352
NFS1_chr20_35663052_35704352	0/0	c0002	1374	3	0	0	3	0	0	copy fasta	NFS1	chr20	35663052	35704352
NFS1_chr20_35663052_35704352	0/0	c0003	1374	2	2	0	0	0	0	copy fasta	NFS1	chr20	35663052	35704352
NFU1_chr2_69391126_69442435	1/0	c0001	765	250	63	29	131	5	21	copy fasta	NFU1	chr2	69391126	69442435
NFU1_chr2_69391126_69442435	0/1	c0002	765	100	25	19	41	4	10	copy fasta	NFU1	chr2	69391126	69442435
NFU1_chr2_69391126_69442435	0/0	c0003	765	9	0	9	0	0	0	copy fasta	NFU1	chr2	69391126	69442435
NFU1_chr2_69391126_69442435	0/0	c0004	765	5	4	1	0	0	0	copy fasta	NFU1	chr2	69391126	69442435