JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NFU1_chr2_69391126_69442435	0/0	c0005	765	4	0	2	0	1	1	copy fasta	NFU1	chr2	69391126	69442435
NFX1_chr9_33285516_33376157	1/1	c0001	3363	270	66	48	127	10	17	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	c0002	3363	8	6	2	0	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	c0003	3363	6	6	0	0	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	c0004	3363	4	0	0	4	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	c0005	3363	3	0	0	0	0	3	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	c0006	3363	2	2	0	0	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	c0007	3363	1	0	0	1	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	c0008	3363	1	0	1	0	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	c0009	3363	1	0	0	1	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	c0010	3363	1	0	0	1	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	c0011	3363	1	0	0	1	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	c0012	3363	1	0	1	0	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFX1_chr9_33285516_33376157	0/0	c0013	3363	1	0	0	1	0	0	copy fasta	NFX1	chr9	33285516	33376157
NFXL1_chr4_47842240_47919583	0/1	c0001	2736	160	30	15	91	5	18	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	1/0	c0002	2736	109	24	20	51	4	9	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	c0003	2736	89	30	28	12	7	12	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	c0004	2736	3	0	3	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	c0005	2736	3	3	0	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	c0006	2736	3	0	0	3	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	c0007	2736	2	0	2	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	c0008	2736	2	0	0	2	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	c0009	2736	1	0	0	0	0	1	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	c0010	2736	1	0	0	0	0	1	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	c0011	2736	1	1	0	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	c0012	2736	1	1	0	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	c0013	2736	1	1	0	0	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	c0014	2736	1	0	0	0	0	1	copy fasta	NFXL1	chr4	47842240	47919583
NFXL1_chr4_47842240_47919583	0/0	c0015	2736	1	0	0	1	0	0	copy fasta	NFXL1	chr4	47842240	47919583
NFYA_chr6_41067974_41107403	1/1	c0001	1044	312	87	52	120	12	39	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	c0002	1044	5	0	0	5	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	c0003	1044	2	2	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	c0004	1044	1	0	0	1	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	c0005	1044	1	0	0	0	0	1	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	c0006	1044	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	c0007	1044	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYA_chr6_41067974_41107403	0/0	c0008	1044	1	1	0	0	0	0	copy fasta	NFYA	chr6	41067974	41107403
NFYB_chr12_104112086_104143210	1/1	c0001	624	391	88	71	176	16	38	copy fasta	NFYB	chr12	104112086	104143210
NFYB_chr12_104112086_104143210	0/0	c0002	624	3	0	3	0	0	0	copy fasta	NFYB	chr12	104112086	104143210
NFYC_chr1_40686704_40776603	1/1	c0001	1008	174	49	34	63	5	21	copy fasta	NFYC	chr1	40686704	40776603
NFYC_chr1_40686704_40776603	0/0	c0002	1008	153	35	27	67	9	15	copy fasta	NFYC	chr1	40686704	40776603
NFYC_chr1_40686704_40776603	0/0	c0003	1008	3	3	0	0	0	0	copy fasta	NFYC	chr1	40686704	40776603
NFYC_chr1_40686704_40776603	0/0	c0004	1008	2	1	1	0	0	0	copy fasta	NFYC	chr1	40686704	40776603
NGB_chr14_77260483_77276206	1/1	c0001	456	358	86	59	162	7	42	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	c0002	456	1	0	0	1	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	c0003	456	1	0	0	1	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	c0004	456	1	1	0	0	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	c0005	456	1	0	1	0	0	0	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	c0006	456	1	0	0	0	0	1	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	c0007	456	1	0	0	0	1	0	copy fasta	NGB	chr14	77260483	77276206