JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NGB_chr14_77260483_77276206	0/0	c0008	456	1	0	0	0	0	1	copy fasta	NGB	chr14	77260483	77276206
NGB_chr14_77260483_77276206	0/0	c0009	456	1	1	0	0	0	0	copy fasta	NGB	chr14	77260483	77276206
NGDN_chr14_23464703_23483173	0/1	c0001	948	209	32	45	93	12	26	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	1/0	c0002	948	147	35	23	71	5	12	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	0/0	c0003	948	22	17	4	0	1	0	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	0/0	c0004	948	4	3	1	0	0	0	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	0/0	c0005	948	3	3	0	0	0	0	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	0/0	c0006	948	2	2	0	0	0	0	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	0/0	c0007	948	2	0	0	0	0	2	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	0/0	c0008	948	1	0	1	0	0	0	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	0/0	c0009	948	1	0	0	1	0	0	copy fasta	NGDN	chr14	23464703	23483173
NGDN_chr14_23464703_23483173	0/0	c0010	948	1	0	0	1	0	0	copy fasta	NGDN	chr14	23464703	23483173
NGEF_chr2_232873701_233018256	0/0	c0001	2133	124	39	20	49	3	13	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/1	c0002	2133	43	16	12	7	2	5	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0003	2133	42	11	13	14	1	3	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0004	2133	41	2	2	31	2	4	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0005	2133	28	10	6	7	3	2	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0006	2133	18	3	1	11	0	3	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0007	2133	14	0	2	9	0	3	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0008	2133	13	0	0	13	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0009	2133	10	3	2	2	1	2	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0010	2133	9	3	2	0	2	2	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0011	2133	4	0	3	1	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0012	2133	3	2	1	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0013	2133	3	3	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0014	2133	3	0	0	1	0	2	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	1/0	c0015	2133	3	0	0	1	0	1	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0016	2133	1	1	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0017	2133	1	0	0	1	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0018	2133	1	1	0	0	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGEF_chr2_232873701_233018256	0/0	c0019	2133	1	0	0	1	0	0	copy fasta	NGEF	chr2	232873701	233018256
NGFR_chr17_49490293_49520008	1/0	c0001	1284	325	92	58	151	8	15	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/1	c0002	1284	65	1	21	9	5	28	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	c0003	1284	17	0	1	14	0	2	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	c0004	1284	7	2	2	0	3	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	c0005	1284	4	0	0	4	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	c0006	1284	2	0	0	0	2	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	c0007	1284	1	1	0	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	c0008	1284	1	0	1	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	c0009	1284	1	0	0	0	0	1	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	c0010	1284	1	0	0	1	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	c0011	1284	1	0	0	1	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGFR_chr17_49490293_49520008	0/0	c0012	1284	1	0	1	0	0	0	copy fasta	NGFR	chr17	49490293	49520008
NGF_chr1_115280917_115343249	1/1	c0001	726	308	70	56	141	5	34	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	c0002	726	86	11	23	41	1	10	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	c0003	726	15	14	1	0	0	0	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	c0004	726	2	0	1	0	0	1	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	c0005	726	2	0	0	0	0	2	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	c0006	726	1	0	1	0	0	0	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	c0007	726	1	1	0	0	0	0	copy fasta	NGF	chr1	115280917	115343249