JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NGF_chr1_115280917_115343249	0/0	c0008	726	1	0	0	1	0	0	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	c0009	726	1	0	0	1	0	0	copy fasta	NGF	chr1	115280917	115343249
NGF_chr1_115280917_115343249	0/0	c0010	726	1	0	0	0	0	1	copy fasta	NGF	chr1	115280917	115343249
NGLY1_chr3_25713944_25788443	1/1	c0001	1965	253	88	60	69	4	30	copy fasta	NGLY1	chr3	25713944	25788443
NGLY1_chr3_25713944_25788443	0/0	c0002	1965	4	4	0	0	0	0	copy fasta	NGLY1	chr3	25713944	25788443
NGLY1_chr3_25713944_25788443	0/0	c0003	1965	4	0	0	4	0	0	copy fasta	NGLY1	chr3	25713944	25788443
NGLY1_chr3_25713944_25788443	0/0	c0004	1965	1	0	0	1	0	0	copy fasta	NGLY1	chr3	25713944	25788443
NGLY1_chr3_25713944_25788443	0/0	c0005	1965	1	1	0	0	0	0	copy fasta	NGLY1	chr3	25713944	25788443
NGLY1_chr3_25713944_25788443	0/0	c0006	1965	1	1	0	0	0	0	copy fasta	NGLY1	chr3	25713944	25788443
NGRN_chr15_90260672_90277211	1/1	c0001	876	426	88	78	205	14	39	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	c0002	876	21	0	7	6	4	4	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	c0003	876	2	1	1	0	0	0	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	c0004	876	2	2	0	0	0	0	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	c0005	876	1	0	0	1	0	0	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	c0006	876	1	1	0	0	0	0	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	c0007	876	1	1	0	0	0	0	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	c0008	876	1	1	0	0	0	0	copy fasta	NGRN	chr15	90260672	90277211
NGRN_chr15_90260672_90277211	0/0	c0009	876	1	0	0	0	0	1	copy fasta	NGRN	chr15	90260672	90277211
NHEJ1_chr2_219064357_219165815	1/1	c0001	900	333	68	51	170	8	34	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	c0002	900	12	12	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	c0003	900	3	2	1	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	c0004	900	1	1	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHEJ1_chr2_219064357_219165815	0/0	c0005	900	1	1	0	0	0	0	copy fasta	NHEJ1	chr2	219064357	219165815
NHERF1_chr17_74743628_74774353	1/0	c0001	1077	335	77	60	138	15	44	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/1	c0002	1077	23	7	13	0	0	2	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	c0003	1077	3	0	1	0	2	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	c0004	1077	2	2	0	0	0	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	c0005	1077	1	0	0	1	0	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	c0006	1077	1	0	0	0	1	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	c0007	1077	1	0	1	0	0	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	c0008	1077	1	0	0	1	0	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	c0009	1077	1	0	1	0	0	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	c0010	1077	1	1	0	0	0	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF1_chr17_74743628_74774353	0/0	c0011	1077	1	1	0	0	0	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF2_chr16_2021902_2044026	1/1	c0001	1014	372	69	75	164	17	45	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	c0002	1014	19	9	3	6	1	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	c0003	1014	12	11	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	c0004	1014	6	6	0	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	c0005	1014	2	2	0	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	c0006	1014	1	0	0	0	0	1	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	c0007	1014	1	0	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	c0008	1014	1	0	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	c0009	1014	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	c0010	1014	1	1	0	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	c0011	1014	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	c0012	1014	1	1	0	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	c0013	1014	1	1	0	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	c0014	1014	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	c0015	1014	1	0	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	c0016	1014	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026