JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NHLRC4_chr16_562005_574495	1/1	c0001	372	417	91	75	181	18	50	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	c0002	372	3	3	0	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	c0003	372	1	0	0	1	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	c0004	372	1	1	0	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	c0005	372	1	1	0	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHLRC4_chr16_562005_574495	0/0	c0006	372	1	0	1	0	0	0	copy fasta	NHLRC4	chr16	562005	574495
NHP2_chr5_178144463_178158885	1/1	c0001	462	412	92	81	174	17	46	copy fasta	NHP2	chr5	178144463	178158885
NHP2_chr5_178144463_178158885	0/0	c0002	462	2	2	0	0	0	0	copy fasta	NHP2	chr5	178144463	178158885
NHP2_chr5_178144463_178158885	0/0	c0003	462	2	2	0	0	0	0	copy fasta	NHP2	chr5	178144463	178158885
NHP2_chr5_178144463_178158885	0/0	c0004	462	1	0	0	0	1	0	copy fasta	NHP2	chr5	178144463	178158885
NHP2_chr5_178144463_178158885	0/0	c0005	462	1	0	1	0	0	0	copy fasta	NHP2	chr5	178144463	178158885
NHSL1_chr6_138417043_138504494	0/1	c0001	4821	179	20	33	102	4	19	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	1/0	c0002	4821	37	2	16	11	2	5	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0003	4821	19	15	3	0	1	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0004	4821	16	13	3	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0005	4821	11	0	0	11	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0006	4821	8	8	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0007	4821	6	3	1	2	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0008	4821	5	0	0	5	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0009	4821	4	0	3	1	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0010	4821	3	3	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0011	4821	3	3	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0012	4821	2	2	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0013	4821	2	2	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0014	4821	2	2	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0015	4821	2	1	1	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0016	4821	2	1	1	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0017	4821	2	2	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0018	4821	2	0	0	0	0	2	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0019	4821	2	2	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0020	4821	2	0	2	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0021	4821	2	0	2	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0022	4821	1	0	1	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0023	4821	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0024	4821	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0025	4821	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0026	4821	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0027	4821	1	0	0	0	1	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0028	4821	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0029	4821	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0030	4821	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0031	4821	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0032	4821	1	0	0	1	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0033	4821	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0034	4821	1	0	0	0	0	1	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0035	4821	1	0	0	0	1	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0036	4821	1	0	0	1	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0037	4821	1	0	0	0	1	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0038	4821	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0039	4821	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494