JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NHSL1_chr6_138417043_138504494	0/0	c0040	4821	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0041	4821	1	1	0	0	0	0	copy fasta	NHSL1	chr6	138417043	138504494
NHSL1_chr6_138417043_138504494	0/0	c0042	4821	1	0	0	0	0	1	copy fasta	NHSL1	chr6	138417043	138504494
NHSL2_chrX_71905845_72158286	0/0	c0001	3678	113	24	15	59	4	11	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0002	3678	26	14	1	3	0	8	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0003	3678	14	14	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0004	3678	12	0	0	12	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0005	3678	4	0	0	4	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0006	3678	4	0	4	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0007	3678	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0008	3678	1	0	1	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0009	3681	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0010	3678	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0011	3678	1	0	0	0	0	1	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0012	3678	1	0	0	0	1	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0013	3678	1	0	1	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0014	3678	1	0	1	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0015	3678	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0016	3678	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0017	3678	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0018	3678	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0019	3678	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	c0020	3678	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHS_chrX_17370200_17740994	0/0	c0001	4956	68	24	11	32	0	1	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	c0002	4956	65	4	13	30	4	14	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	c0003	4956	5	4	1	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	c0004	4956	5	0	2	3	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	c0005	4956	5	5	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	c0006	4953	4	3	1	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	c0007	4956	2	2	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	c0008	4956	2	2	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	c0009	4953	1	1	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	c0010	4953	1	1	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	c0011	4956	1	1	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	c0012	4956	1	0	0	1	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	c0013	4956	1	0	0	1	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	c0014	4956	1	0	1	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	c0015	4956	1	0	0	0	1	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	c0016	4920	1	1	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NIBAN1_chr1_184786032_184979508	1/1	c0001	2787	123	7	22	68	6	18	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0002	2787	43	20	7	12	0	4	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0003	2787	18	18	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0004	2787	8	3	0	0	1	4	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0005	2787	8	0	0	8	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0006	2787	7	7	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0007	2787	6	5	1	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0008	2787	5	5	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0009	2787	4	2	2	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0010	2787	3	3	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0011	2787	3	3	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508