JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NIBAN1_chr1_184786032_184979508	0/0	c0012	2787	3	3	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0013	2787	3	3	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0014	2787	3	0	0	3	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0015	2787	2	2	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0016	2787	2	0	2	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0017	2787	2	0	1	0	1	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0018	2787	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0019	2787	1	0	0	1	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0020	2787	1	0	1	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0021	2787	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0022	2787	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0023	2787	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0024	2787	1	0	0	1	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0025	2787	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0026	2787	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0027	2787	1	0	1	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0028	2787	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0029	2787	1	0	0	1	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	c0030	2787	1	0	1	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN2_chr9_127500343_127574073	1/1	c0001	2241	302	83	55	112	9	41	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	c0002	2241	8	0	4	0	3	1	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	c0003	2241	5	0	0	5	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	c0004	2241	4	0	0	4	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	c0005	2241	2	0	0	0	0	2	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	c0006	2241	2	1	1	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	c0007	2241	2	0	1	0	1	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	c0008	2241	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	c0009	2241	1	0	1	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	c0010	2241	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	c0011	2241	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	c0012	2241	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	c0013	2241	1	0	0	0	1	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	c0014	2241	1	0	0	1	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN3_chr19_17522267_17558640	0/1	c0001	1863	111	40	28	30	4	8	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0002	1863	58	14	17	12	6	9	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0003	1863	57	9	7	33	1	7	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	1/0	c0004	1863	54	0	5	42	0	6	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0005	1863	48	0	2	44	0	2	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0006	1863	24	4	4	9	1	6	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0007	1863	10	10	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0008	1863	9	8	1	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0009	1863	4	0	4	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0010	1850	4	0	1	3	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0011	1863	3	0	2	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0012	1863	3	3	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0013	1863	2	1	1	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0014	1863	2	2	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0015	1863	2	1	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0016	1863	1	0	0	0	0	1	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0017	1863	1	1	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640