JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NIBAN3_chr19_17522267_17558640	0/0	c0018	1863	1	1	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0019	1863	1	1	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0020	1863	1	0	0	0	0	1	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0021	1863	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0022	1863	1	1	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0023	1863	1	0	0	0	0	1	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0024	1863	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0025	1863	1	0	0	0	0	1	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0026	1863	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0027	1863	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	c0028	1863	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NICN1_chr3_49417333_49434324	1/1	c0001	642	373	94	69	159	16	33	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	c0002	642	8	1	6	1	0	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	c0003	642	3	0	1	0	2	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	c0004	642	1	0	0	0	0	1	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	c0005	642	1	1	0	0	0	0	copy fasta	NICN1	chr3	49417333	49434324
NID1_chr1_235970830_236070090	0/0	c0001	3744	45	10	1	29	2	3	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0002	3744	28	12	2	4	1	9	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0003	3744	26	0	9	11	0	6	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	1/0	c0004	3744	25	6	6	5	4	3	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/1	c0005	3744	23	7	3	9	0	3	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0006	3744	20	2	3	15	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0007	3744	19	10	4	1	3	1	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0008	3744	16	3	3	9	0	1	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0009	3744	16	4	6	4	0	2	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0010	3744	12	0	4	5	1	2	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0011	3744	5	0	0	5	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0012	3744	5	0	0	4	1	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0013	3744	5	0	3	0	1	1	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0014	3744	4	0	0	4	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0015	3744	4	3	1	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0016	3744	4	0	0	4	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0017	3744	4	1	2	0	0	1	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0018	3744	4	0	0	4	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0019	3744	3	3	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0020	3744	3	0	0	3	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0021	3744	3	0	0	2	0	1	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0022	3744	3	2	1	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0023	3744	3	2	1	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0024	3744	3	3	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0025	3744	3	0	0	3	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0026	3744	2	0	0	2	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0027	3744	2	2	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0028	3744	2	0	0	2	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0029	3744	2	1	1	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0030	3744	2	0	2	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0031	3744	2	2	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0032	3744	2	0	0	2	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0033	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0034	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090