JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NID1_chr1_235970830_236070090	0/0	c0035	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0036	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0037	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0038	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0039	3744	1	0	0	1	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0040	3744	1	0	0	1	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0041	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0042	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0043	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0044	3744	1	0	0	0	0	1	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0045	3744	1	0	0	1	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0046	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0047	3744	1	0	1	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0048	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0049	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0050	3744	1	0	0	1	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0051	3744	1	0	1	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0052	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0053	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0054	3744	1	0	0	1	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0055	3744	1	0	0	0	1	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0056	3744	1	0	1	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0057	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0058	3744	1	0	0	0	0	1	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0059	3744	1	0	0	1	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0060	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0061	3744	1	0	0	1	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0062	3744	1	0	0	0	0	1	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0063	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0064	3744	1	0	1	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0065	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	c0066	3744	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID2_chr14_51999809_52074059	0/1	c0001	4128	76	11	13	35	7	9	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0002	4128	49	0	10	35	1	3	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0003	4128	45	0	10	32	0	3	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0004	4128	44	7	4	30	1	2	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0005	4128	15	3	5	5	0	2	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0006	4128	11	9	1	0	1	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0007	4128	9	4	0	2	0	3	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0008	4128	9	9	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0009	4128	8	0	5	0	2	1	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0010	4128	8	0	3	3	0	2	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0011	4128	7	1	1	4	0	1	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0012	4128	5	1	3	0	0	1	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0013	4128	5	1	3	0	1	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0014	4128	4	4	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0015	4128	4	0	1	0	0	3	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0016	4128	4	4	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0017	4128	3	3	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	c0018	4128	3	0	3	0	0	0	copy fasta	NID2	chr14	51999809	52074059