JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NID2_chr14_51999809_52074059	0/0	c0069	4128	1	1	0	0	0	0	copy fasta	NID2	chr14	51999809	52074059
NIF3L1_chr2_200884371_200908925	1/1	c0001	1134	157	29	34	70	7	15	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	c0002	1134	81	57	12	3	5	4	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	c0003	1134	3	0	0	3	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	c0004	1134	2	2	0	0	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	c0005	1134	1	0	0	1	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	c0006	1134	1	0	0	1	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	c0007	1134	1	0	0	1	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	c0008	1134	1	1	0	0	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	c0009	1134	1	0	0	0	0	1	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	c0010	1134	1	0	0	1	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	c0011	1134	1	1	0	0	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIFK_chr2_121721945_121741875	1/1	c0001	882	389	89	68	176	12	42	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	c0002	882	5	5	0	0	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	c0003	882	2	2	0	0	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	c0004	882	2	0	0	0	0	2	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	c0005	882	1	0	0	1	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	c0006	882	1	0	0	1	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIM1K_chr5_43187225_43285850	1/0	c0001	1311	189	51	44	58	8	27	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/1	c0002	1311	69	19	13	20	5	11	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	c0003	1311	8	0	0	8	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	c0004	1311	8	6	2	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	c0005	1311	6	5	1	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	c0006	1311	2	2	0	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	c0007	1311	1	0	1	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	c0008	1311	1	1	0	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	c0009	1311	1	0	1	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	c0010	1311	1	1	0	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	c0011	1311	1	0	0	1	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	c0012	1311	1	0	0	0	0	1	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	c0013	1320	1	0	0	1	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	c0014	1311	1	0	0	0	0	1	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	c0015	1311	1	0	0	0	1	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	c0016	1311	1	1	0	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NINJ1_chr9_93116496_93139251	0/1	c0001	459	270	56	40	125	14	34	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	1/0	c0002	459	86	30	11	33	2	9	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	c0003	459	3	2	1	0	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	c0004	459	3	3	0	0	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	c0005	459	1	0	0	1	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	c0006	459	1	0	0	1	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	c0007	459	1	1	0	0	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	c0008	459	1	0	1	0	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	c0009	459	1	0	1	0	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	c0010	459	1	0	0	0	0	1	copy fasta	NINJ1	chr9	93116496	93139251
NINJ2_chr12_559296_668445	1/1	c0001	429	398	94	75	181	10	36	copy fasta	NINJ2	chr12	559296	668445
NINJ2_chr12_559296_668445	0/0	c0002	429	1	0	0	1	0	0	copy fasta	NINJ2	chr12	559296	668445
NINJ2_chr12_559296_668445	0/0	c0003	429	1	0	0	1	0	0	copy fasta	NINJ2	chr12	559296	668445
NINJ2_chr12_559296_668445	0/0	c0004	429	1	0	1	0	0	0	copy fasta	NINJ2	chr12	559296	668445
NINJ2_chr12_559296_668445	0/0	c0005	429	1	0	0	1	0	0	copy fasta	NINJ2	chr12	559296	668445
NINJ2_chr12_559296_668445	0/0	c0006	429	1	1	0	0	0	0	copy fasta	NINJ2	chr12	559296	668445