JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NINJ2_chr12_559296_668445	0/0	c0007	429	1	1	0	0	0	0	copy fasta	NINJ2	chr12	559296	668445
NINL_chr20_25447697_25590531	0/0	c0001	4143	94	5	16	62	2	9	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	1/0	c0002	4149	78	18	31	1	8	19	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0003	4149	28	5	2	21	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/1	c0004	4143	15	6	6	0	2	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0005	4143	13	8	2	0	0	3	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0006	4143	9	8	1	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0007	4143	7	7	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0008	4149	6	6	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0009	4143	5	0	0	5	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0010	4143	5	5	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0011	4149	4	3	1	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0012	4143	4	4	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0013	4149	3	3	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0014	4143	3	0	1	0	0	2	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0015	4143	3	1	2	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0016	4143	2	0	0	2	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0017	4143	2	0	0	2	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0018	4149	2	2	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0019	4143	2	0	0	2	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0020	4149	2	2	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0021	4143	2	2	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0022	4149	1	0	1	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0023	4149	1	0	1	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0024	4149	1	1	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0025	4143	1	0	0	0	0	1	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0026	4143	1	0	0	1	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0027	4149	1	0	1	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0028	4143	1	0	0	1	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0029	4143	1	0	0	1	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0030	4143	1	0	0	1	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0031	4143	1	0	0	1	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0032	4143	1	0	0	1	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0033	4149	1	0	0	0	0	1	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0034	4149	1	0	0	1	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0035	4149	1	1	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0036	4143	1	0	0	1	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0037	4143	1	0	1	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0038	4143	1	0	0	0	0	1	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0039	4143	1	1	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0040	4149	1	1	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0041	4149	1	1	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	c0042	4143	1	0	0	1	0	0	copy fasta	NINL	chr20	25447697	25590531
NIN_chr14_50714763_50836162	0/0	c0001	6402	53	4	8	26	4	11	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0002	6402	46	32	10	0	3	1	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0003	6402	41	0	14	19	2	6	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0004	6402	21	1	7	11	0	2	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0005	6402	13	5	4	2	1	1	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/1	c0006	6402	10	2	6	0	0	1	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0007	6402	9	0	0	9	0	0	copy fasta	NIN	chr14	50714763	50836162