JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NIN_chr14_50714763_50836162	0/0	c0008	6402	9	2	1	5	0	1	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0009	6402	5	5	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0010	6402	5	5	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0011	6402	5	5	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0012	6402	3	2	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0013	6402	3	3	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0014	6402	3	2	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0015	6402	3	1	0	0	0	2	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0016	6402	3	0	3	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0017	6402	2	0	0	0	0	2	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0018	6402	2	0	2	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0019	6402	2	0	0	0	0	2	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0020	6402	2	1	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0021	6402	2	1	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0022	6402	2	0	2	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0023	6402	2	0	1	0	1	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0024	6402	2	2	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0025	6402	2	2	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0026	6402	2	1	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0027	6402	2	2	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0028	6402	2	2	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0029	6402	2	2	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0030	6402	2	0	0	0	0	2	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0031	6402	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0032	6402	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0033	6402	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0034	6402	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0035	6402	1	0	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0036	6402	1	0	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0037	6402	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0038	6402	1	0	0	0	1	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0039	6402	1	0	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0040	6402	1	0	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0041	6402	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0042	6402	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0043	6402	1	0	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0044	6402	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0045	6402	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0046	6402	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0047	6402	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0048	6402	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0049	6402	1	0	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0050	6402	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0051	6402	1	0	0	0	0	1	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0052	6402	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0053	6402	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0054	6402	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0055	6402	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0056	6402	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0057	6402	1	0	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162