JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NIN_chr14_50714763_50836162	0/0	c0058	6402	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	1/0	c0059	6402	1	0	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0060	6402	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0061	6402	1	0	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	c0062	6402	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIP7_chr16_69334772_69348106	1/1	c0001	543	398	95	73	166	18	44	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	c0002	543	1	0	1	0	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	c0003	543	1	1	0	0	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIPA1_chr15_22781644_22834789	0/1	c0001	990	184	26	38	75	10	34	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	1/0	c0002	990	85	32	15	28	2	7	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	c0003	987	82	10	17	47	3	5	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	c0004	987	42	22	6	11	1	2	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	c0005	987	3	0	0	3	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	c0006	987	2	0	0	2	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	c0007	987	1	0	0	1	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	c0008	990	1	0	0	1	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA2_chr15_22833666_22873384	1/1	c0001	1083	304	66	51	151	8	26	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	c0002	1081	58	0	2	54	1	1	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	c0003	1083	40	18	10	3	3	6	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	c0004	1081	17	3	4	0	4	6	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	c0005	1081	10	3	4	0	0	3	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	c0006	1083	1	1	0	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	c0007	1083	1	1	0	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	c0008	1083	1	0	1	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPAL1_chr4_48011772_48045173	1/1	c0001	1233	315	77	55	132	13	36	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	c0002	1233	84	13	17	42	3	9	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	c0003	1233	5	0	0	5	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	c0004	1233	3	0	0	3	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	c0005	1233	3	3	0	0	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	c0006	1233	1	0	0	0	0	1	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	c0007	1233	1	0	0	1	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	c0008	1233	1	0	0	1	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	c0009	1233	1	1	0	0	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL2_chr8_98184826_98299235	1/1	c0001	1152	187	53	41	65	7	19	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	c0002	1152	111	21	25	46	6	13	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	c0003	1152	15	0	0	15	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	c0004	1152	9	0	1	8	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	c0005	1152	5	5	0	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	c0006	1152	2	2	0	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	c0007	1152	2	0	1	0	1	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	c0008	1152	1	1	0	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL3_chr1_24410802_24477976	1/0	c0001	1221	241	70	46	89	10	25	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/1	c0002	1221	121	14	22	61	6	17	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	c0003	1221	6	0	0	6	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	c0004	1221	4	0	0	4	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	c0005	1221	3	3	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	c0006	1221	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	c0007	1221	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	c0008	1221	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	c0009	1221	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976