JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NIPAL3_chr1_24410802_24477976	0/0	c0010	1221	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL4_chr5_157455213_157479722	0/1	c0001	1215	188	37	38	91	7	14	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	c0002	1215	157	35	37	60	7	18	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	c0003	1215	37	19	8	0	2	8	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	1/0	c0004	1215	2	0	1	0	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	c0005	1215	1	0	0	1	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	c0006	1215	1	1	0	0	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	c0007	1215	1	1	0	0	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	c0008	1215	1	0	0	1	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	c0009	1215	1	0	0	1	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	c0010	1215	1	0	0	1	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	c0011	1215	1	0	0	1	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	c0012	1215	1	1	0	0	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPBL_chr5_36871769_37071413	1/1	c0001	8415	184	48	34	77	9	14	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0002	8415	66	5	9	44	2	6	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0003	8415	40	8	9	16	1	6	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0004	8415	15	14	1	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0005	8415	4	4	0	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0006	8415	4	4	0	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0007	8415	2	0	0	2	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0008	8415	1	0	1	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0009	8415	1	1	0	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0010	8415	1	0	0	1	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0011	8415	1	0	0	1	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0012	8415	1	0	0	1	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0013	8415	1	0	1	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0014	8415	1	1	0	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0015	8415	1	1	0	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0016	8415	1	1	0	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0017	8415	1	0	0	1	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0018	8415	1	1	0	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0019	8415	1	0	1	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	c0020	8415	1	0	0	1	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPSNAP1_chr22_29549808_29586113	1/1	c0001	855	297	74	47	127	14	33	copy fasta	NIPSNAP1	chr22	29549808	29586113
NIPSNAP1_chr22_29549808_29586113	0/0	c0002	855	77	18	17	33	4	5	copy fasta	NIPSNAP1	chr22	29549808	29586113
NIPSNAP1_chr22_29549808_29586113	0/0	c0003	855	1	1	0	0	0	0	copy fasta	NIPSNAP1	chr22	29549808	29586113
NIPSNAP1_chr22_29549808_29586113	0/0	c0004	855	1	1	0	0	0	0	copy fasta	NIPSNAP1	chr22	29549808	29586113
NIPSNAP2_chr7_55959585_56005179	1/1	c0001	861	411	91	72	188	16	42	copy fasta	NIPSNAP2	chr7	55959585	56005179
NIPSNAP2_chr7_55959585_56005179	0/0	c0002	861	4	2	2	0	0	0	copy fasta	NIPSNAP2	chr7	55959585	56005179
NIPSNAP2_chr7_55959585_56005179	0/0	c0003	861	1	1	0	0	0	0	copy fasta	NIPSNAP2	chr7	55959585	56005179
NIPSNAP3A_chr9_104742683_104765120	0/1	c0001	744	276	77	56	113	8	21	copy fasta	NIPSNAP3A	chr9	104742683	104765120
NIPSNAP3A_chr9_104742683_104765120	1/0	c0002	744	157	17	24	90	6	19	copy fasta	NIPSNAP3A	chr9	104742683	104765120
NIPSNAP3A_chr9_104742683_104765120	0/0	c0003	744	6	0	0	6	0	0	copy fasta	NIPSNAP3A	chr9	104742683	104765120
NIPSNAP3A_chr9_104742683_104765120	0/0	c0004	744	6	6	0	0	0	0	copy fasta	NIPSNAP3A	chr9	104742683	104765120
NIPSNAP3A_chr9_104742683_104765120	0/0	c0005	744	1	0	0	1	0	0	copy fasta	NIPSNAP3A	chr9	104742683	104765120
NIPSNAP3B_chr9_104759129_104782764	1/1	c0001	744	291	78	59	108	13	31	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	c0002	744	84	1	13	54	3	13	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	c0003	744	58	5	4	49	0	0	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	c0004	744	8	7	1	0	0	0	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	c0005	744	3	3	0	0	0	0	copy fasta	NIPSNAP3B	chr9	104759129	104782764