JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NKAIN2_chr6_123798865_124830640	0/0	c0001	627	51	38	5	2	0	6	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	c0002	627	13	12	1	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	c0003	627	1	0	1	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	c0004	627	1	0	1	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN3_chr8_62243854_62989904	0/0	c0001	657	67	38	11	15	3	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	c0002	657	40	11	11	10	3	5	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	c0003	657	32	10	4	11	2	5	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	c0004	657	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	c0005	657	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	c0006	657	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	c0007	657	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	c0008	657	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN4_chr20_63235784_63259463	0/0	c0001	627	122	17	26	56	4	19	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	1/1	c0002	627	105	21	26	25	9	22	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	c0003	627	69	8	11	42	2	6	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	c0004	627	20	16	4	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	c0005	627	17	14	1	0	1	1	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	c0006	627	4	0	0	4	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	c0007	627	3	2	1	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	c0008	627	2	2	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	c0009	627	2	2	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	c0010	627	2	2	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	c0011	627	2	2	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	c0012	627	1	1	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	c0013	627	1	1	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	c0014	627	1	1	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	c0015	627	1	0	0	1	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	c0016	627	1	0	1	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	c0017	627	1	1	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAPD1_chr11_112069299_112090150	1/1	c0001	882	374	96	71	171	6	28	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	c0002	882	2	0	2	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	c0003	882	2	0	0	2	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	c0004	882	1	1	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	c0005	882	1	0	1	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	c0006	882	1	1	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	c0007	882	1	0	0	1	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPL_chr6_28254297_28265958	0/0	c0001	1209	133	3	28	71	9	22	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/1	c0002	1209	83	28	14	26	5	9	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	c0003	1209	74	12	4	54	1	3	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	c0004	1209	52	8	9	32	0	3	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	c0005	1209	30	3	5	19	0	3	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	1/0	c0006	1209	26	19	5	0	1	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	c0007	1209	6	0	4	2	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	c0008	1209	5	5	0	0	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	c0009	1209	5	4	1	0	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	c0010	1209	2	1	1	0	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	c0011	1209	1	0	1	0	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	c0012	1209	1	1	0	0	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	c0013	1209	1	0	0	1	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	c0014	1209	1	0	0	1	0	0	copy fasta	NKAPL	chr6	28254297	28265958