JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NKAP_chrX_119915672_119948751	1/1	c0001	1248	272	47	47	139	9	28	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	c0002	1245	29	22	5	0	0	2	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	c0003	1248	11	11	0	0	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	c0004	1247	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	c0005	1249	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	c0006	1249	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	c0007	1249	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	c0008	1249	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	c0009	1249	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	c0010	1248	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	c0011	1248	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKD1_chr16_50543396_50654249	1/1	c0001	1413	200	68	38	50	8	34	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	c0002	1413	6	6	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	c0003	1413	2	0	1	0	0	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	c0004	1413	2	0	0	2	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	c0005	1413	1	0	0	0	0	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	c0006	1413	1	0	1	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD2_chr5_1003802_1043943	0/1	c0001	1356	278	59	61	106	14	37	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0002	1356	10	6	3	0	0	1	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0003	1347	7	0	0	7	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0004	1356	4	4	0	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0005	1356	3	3	0	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0006	1356	2	0	0	2	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0007	1356	2	1	1	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0008	1356	2	1	1	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0009	1338	2	0	1	0	0	1	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0010	1356	2	0	0	2	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0011	1356	1	1	0	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0012	1356	1	0	0	1	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0013	1356	1	0	0	1	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0014	1356	1	1	0	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0015	1356	1	0	0	1	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0016	1356	1	0	1	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	c0017	1356	1	0	0	0	0	1	copy fasta	NKD2	chr5	1003802	1043943
NKG7_chr19_51366620_51377654	1/1	c0001	498	420	89	82	186	18	43	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	c0002	498	4	4	0	0	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	c0003	498	4	4	0	0	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	c0004	498	1	0	1	0	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	c0005	498	1	0	1	0	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	c0006	498	1	0	0	1	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	c0007	498	1	0	0	1	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	c0008	498	1	1	0	0	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	c0009	498	1	0	0	0	0	1	copy fasta	NKG7	chr19	51366620	51377654
NKIRAS1_chr3_23884951_23921990	1/1	c0001	579	353	68	73	161	13	36	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	c0002	579	40	20	11	1	0	8	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	c0003	579	2	0	0	2	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	c0004	579	2	0	0	0	0	2	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	c0005	579	1	0	0	0	1	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS2_chr17_42015090_42030641	1/1	c0001	576	324	92	56	137	11	26	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	0/0	c0002	576	3	0	0	0	1	2	copy fasta	NKIRAS2	chr17	42015090	42030641