JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NKIRAS2_chr17_42015090_42030641	0/0	c0003	576	1	0	0	1	0	0	copy fasta	NKIRAS2	chr17	42015090	42030641
NKPD1_chr19_45144744_45165982	1/1	c0001	2499	327	62	60	149	14	40	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	c0002	2499	29	5	5	13	1	5	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	c0003	2499	25	10	2	13	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	c0004	2499	11	9	2	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	c0005	2499	8	0	4	0	1	3	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	c0006	2499	5	0	0	5	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	c0007	2499	5	5	0	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	c0008	2499	3	3	0	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	c0009	2499	2	2	0	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	c0010	2499	2	2	0	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	c0011	2499	2	0	2	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	c0012	2499	1	0	0	1	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	c0013	2499	1	0	0	1	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	c0014	2499	1	0	0	1	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	c0015	2499	1	0	0	1	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	c0016	2499	1	0	1	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKTR_chr3_42595686_42653735	1/1	c0001	4389	249	47	52	111	9	28	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0002	4389	31	22	4	1	0	4	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0003	4389	25	1	1	22	0	1	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0004	4389	12	5	2	3	1	1	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0005	4389	6	6	0	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0006	4389	5	5	0	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0007	4389	3	1	1	0	1	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0008	4389	3	0	0	3	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0009	4389	2	0	0	2	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0010	4389	2	0	2	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0011	4389	2	1	1	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0012	4389	1	0	0	1	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0013	4389	1	0	0	1	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0014	4389	1	0	0	1	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0015	4389	1	0	1	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0016	4389	1	0	0	1	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0017	4389	1	0	0	1	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0018	4389	1	0	1	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0019	4389	1	1	0	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0020	4389	1	0	1	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0021	4389	1	0	0	0	1	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0022	4389	1	0	0	1	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	c0023	4389	1	1	0	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKX1-1_chr4_1397932_1411442	0/0	c0001	1347	268	68	52	108	7	33	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	1/1	c0002	1347	93	22	15	34	7	13	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	c0003	1347	8	1	0	7	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	c0004	1347	2	0	1	0	0	1	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	c0005	1347	1	0	0	1	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	c0006	1347	1	0	0	1	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	c0007	1347	1	0	0	1	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	c0008	1347	1	1	0	0	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	c0009	1347	1	0	0	1	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	c0010	1347	1	0	0	1	0	0	copy fasta	NKX1-1	chr4	1397932	1411442