JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NKX1-1_chr4_1397932_1411442	0/0	c0011	1347	1	0	1	0	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	c0012	1347	1	0	1	0	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	c0013	1347	1	1	0	0	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	c0014	1347	1	0	0	0	0	1	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-1_chr4_1397932_1411442	0/0	c0015	1347	1	1	0	0	0	0	copy fasta	NKX1-1	chr4	1397932	1411442
NKX1-2_chr10_124440243_124455035	1/1	c0001	933	351	57	68	175	12	37	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	c0002	933	32	2	0	23	1	6	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	c0003	933	19	18	1	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	c0004	933	14	1	5	2	2	4	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	c0005	933	13	13	0	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	c0006	933	4	0	3	0	1	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	c0007	933	3	3	0	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	c0008	933	2	2	0	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	c0009	933	1	0	0	1	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	c0010	933	1	0	1	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	c0011	933	1	1	0	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	c0012	933	1	0	0	1	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	c0013	933	1	0	0	1	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	c0014	933	1	0	0	1	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	c0015	933	1	0	0	0	0	1	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	c0016	933	1	1	0	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX2-1_chr14_36511397_36525232	1/1	c0001	1206	417	94	84	178	18	41	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	c0002	1206	2	2	0	0	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	c0003	1206	1	0	1	0	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	c0004	1206	1	0	0	0	0	1	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	c0005	1206	1	0	0	1	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	c0006	1206	1	0	0	0	0	1	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	c0007	1206	1	0	0	0	0	1	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	c0008	1206	1	0	1	0	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	c0009	1206	1	0	0	1	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-2_chr20_21506017_21519064	1/1	c0001	822	377	94	62	165	15	39	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	c0002	822	8	0	4	0	3	1	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	c0003	822	4	0	4	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	c0004	822	1	0	0	1	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	c0005	822	1	0	1	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	c0006	822	1	1	0	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	c0007	822	1	0	1	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	c0008	822	1	1	0	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-3_chr10_99527942_99541524	0/1	c0001	1095	209	50	42	87	9	20	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	1/0	c0002	1095	161	32	30	75	9	14	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	c0003	1095	18	7	6	3	0	2	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	c0004	1095	6	6	0	0	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	c0005	1095	3	3	0	0	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	c0006	1095	2	2	0	0	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	c0007	1095	1	0	0	0	0	1	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	c0008	1095	1	0	0	0	0	1	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	c0009	1095	1	0	0	1	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	c0010	1095	1	0	0	1	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	c0011	1083	1	0	0	1	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-4_chr20_21390365_21402526	1/1	c0001	1065	394	93	63	179	14	43	copy fasta	NKX2-4	chr20	21390365	21402526