JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NKX2-4_chr20_21390365_21402526	0/0	c0002	1065	14	0	0	14	0	0	copy fasta	NKX2-4	chr20	21390365	21402526
NKX2-4_chr20_21390365_21402526	0/0	c0003	1065	6	0	3	3	0	0	copy fasta	NKX2-4	chr20	21390365	21402526
NKX2-4_chr20_21390365_21402526	0/0	c0004	1065	3	1	0	0	0	2	copy fasta	NKX2-4	chr20	21390365	21402526
NKX2-4_chr20_21390365_21402526	0/0	c0005	1065	1	1	0	0	0	0	copy fasta	NKX2-4	chr20	21390365	21402526
NKX2-4_chr20_21390365_21402526	0/0	c0006	1065	1	0	0	0	0	1	copy fasta	NKX2-4	chr20	21390365	21402526
NKX2-4_chr20_21390365_21402526	0/0	c0007	1065	1	1	0	0	0	0	copy fasta	NKX2-4	chr20	21390365	21402526
NKX2-5_chr5_173227109_173240206	0/1	c0001	975	213	52	36	103	3	18	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	1/0	c0002	975	171	32	34	72	11	21	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	c0003	975	29	0	0	27	0	2	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	c0004	975	5	3	2	0	0	0	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	c0005	975	3	0	3	0	0	0	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	c0006	975	3	3	0	0	0	0	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	c0007	975	3	2	1	0	0	0	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	c0008	975	1	0	0	1	0	0	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	c0009	975	1	0	0	1	0	0	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	c0010	975	1	0	0	0	0	1	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-6_chr8_23696740_23711756	1/1	c0001	906	338	82	61	149	12	32	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	c0002	906	76	4	17	42	3	10	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	c0003	906	5	0	2	0	1	2	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	c0004	906	5	5	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	c0005	906	4	4	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	c0006	906	1	1	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	c0007	906	1	0	0	0	0	1	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	c0008	906	1	0	0	1	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	c0009	906	1	0	0	0	0	1	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	c0010	906	1	1	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	c0011	906	1	1	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-8_chr14_36575004_36587614	1/1	c0001	720	386	82	71	172	18	41	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	c0002	720	24	0	0	24	0	0	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	c0003	720	9	8	1	0	0	0	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	c0004	720	2	0	2	0	0	0	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	c0005	720	1	0	0	1	0	0	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	c0006	720	1	0	0	1	0	0	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	c0007	720	1	1	0	0	0	0	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	c0008	720	1	0	0	0	0	1	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	c0009	720	1	1	0	0	0	0	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	c0010	720	1	0	0	0	0	1	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	c0011	720	1	0	0	0	0	1	copy fasta	NKX2-8	chr14	36575004	36587614
NKX3-1_chr8_23673697_23687938	1/1	c0001	705	391	81	73	175	16	44	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	c0002	705	11	10	1	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	c0003	705	5	0	5	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	c0004	705	3	3	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	c0005	705	1	0	0	1	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	c0006	705	1	0	1	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-2_chr4_13535830_13549508	0/1	c0001	1002	250	18	54	131	12	34	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	1/0	c0002	1002	110	61	25	9	6	8	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	c0003	1002	16	16	0	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	c0004	1002	6	0	0	0	0	6	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	c0005	1002	1	0	0	1	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	c0006	1002	1	1	0	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508