JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NKX3-2_chr4_13535830_13549508	0/0	c0007	1002	1	0	1	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	c0008	1002	1	0	0	1	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	c0009	1002	1	1	0	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	c0010	1002	1	1	0	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	c0011	1002	1	0	0	1	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	c0012	1002	1	0	0	1	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX6-1_chr4_84486985_84504292	1/1	c0001	1104	422	94	78	200	10	38	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	c0002	1104	5	0	0	5	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	c0003	1104	2	0	0	2	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	c0004	1104	2	2	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	c0005	1104	1	1	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	c0006	1104	1	0	0	1	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	c0007	1104	1	1	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	c0008	1104	1	0	0	1	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	c0009	1104	1	0	0	1	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-2_chr10_132778181_132791147	0/1	c0001	834	347	83	59	147	17	40	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	1/0	c0002	834	7	1	2	0	1	2	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	c0003	834	1	0	0	1	0	0	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	c0004	834	1	0	1	0	0	0	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-3_chr8_41640177_41655817	1/1	c0001	798	414	86	70	194	18	44	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	c0002	798	3	3	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	c0003	798	3	0	0	3	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	c0004	798	2	2	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	c0005	798	2	0	2	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	c0006	798	2	2	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	c0007	798	1	1	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	c0008	798	1	1	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	c0009	798	1	0	1	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	c0010	798	1	0	0	1	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	c0011	798	1	0	0	1	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	c0012	798	1	0	1	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	c0013	798	1	1	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	c0014	784	1	0	0	1	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NLE1_chr17_35123730_35147303	0/0	c0001	1458	289	70	59	113	11	36	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/1	c0002	1458	50	12	10	16	3	8	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	c0003	1458	33	0	0	32	0	1	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	c0004	1458	6	0	0	5	0	1	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	c0005	1458	4	4	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	c0006	1458	4	4	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	c0007	1458	3	3	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	c0008	1458	2	0	2	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	c0009	1458	2	1	1	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	1/0	c0010	1458	1	0	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	c0011	1458	1	0	0	1	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	c0012	1458	1	0	0	1	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	c0013	1458	1	1	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	c0014	1458	1	0	0	1	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	c0015	1458	1	0	0	1	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	c0016	1458	1	1	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLGN1_chr3_173392744_174299372	0/0	c0001	2532	33	26	2	2	0	3	copy fasta	NLGN1	chr3	173392744	174299372