JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLGN1_chr3_173392744_174299372	0/0	c0002	2532	6	4	1	0	0	1	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	c0003	2532	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	c0004	2532	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	c0005	2532	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	c0006	2532	1	0	1	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	c0007	2532	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN2_chr17_7402845_7424860	0/0	c0001	2508	184	20	37	107	3	17	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	1/0	c0002	2508	73	44	6	12	1	9	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/1	c0003	2508	65	12	18	26	6	2	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0004	2508	17	3	0	11	0	3	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0005	2508	15	1	6	0	2	6	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0006	2508	14	0	7	3	2	2	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0007	2508	8	1	5	0	2	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0008	2509	8	1	3	4	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0009	2508	5	3	1	0	0	1	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0010	2509	4	0	0	3	0	1	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0011	2509	3	0	0	0	0	3	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0012	2508	3	3	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0013	2508	2	2	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0014	2508	2	2	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0015	2508	2	0	0	2	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0016	2508	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0017	2508	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0018	2508	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0019	2509	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0020	2508	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0021	2508	1	0	0	0	0	1	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0022	2508	1	0	0	1	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0023	2508	1	0	0	1	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0024	2508	1	0	0	1	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0025	2508	1	0	1	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0026	2509	1	0	0	0	0	1	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0027	2508	1	0	0	1	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	c0028	2508	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN3_chrX_71139841_71176201	1/1	c0001	2547	258	73	60	88	9	26	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	c0002	2548	7	2	1	2	0	2	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	c0003	2547	4	4	0	0	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	c0004	2547	1	1	0	0	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	c0005	2547	1	0	0	0	0	1	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	c0006	2547	1	0	0	1	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	c0007	2554	1	0	0	1	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	c0008	2547	1	0	0	1	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	c0009	2546	1	0	0	1	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	c0010	2547	1	1	0	0	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	c0011	2547	1	0	0	0	0	1	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	c0012	2546	1	1	0	0	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN4X_chrX_5885042_6233867	1/1	c0001	2451	99	5	17	61	2	12	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	0/0	c0002	2451	19	0	1	15	2	1	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	0/0	c0003	2451	5	3	2	0	0	0	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	0/0	c0004	2451	1	0	0	1	0	0	copy fasta	NLGN4X	chrX	5885042	6233867