Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCC12_chr16_48075882_48160993	0/0	c0029	4078	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	c0030	4078	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC1_chr16_15944616_16148053	0/0	c0001	4596	74	41	5	25	0	3	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0002	4596	47	10	5	15	3	14	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0003	4596	31	3	3	17	0	8	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0004	4596	17	3	6	5	2	1	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0005	4596	14	3	5	2	3	1	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0006	4596	6	0	2	3	1	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0007	4596	5	5	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0008	4596	5	4	1	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0009	4596	5	0	0	4	0	1	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0010	4596	4	0	3	1	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0011	4596	4	0	0	4	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0012	4596	3	2	1	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0013	4596	3	0	1	1	0	1	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/1	c0014	4596	2	0	0	0	0	1	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0015	4596	2	0	0	0	2	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0016	4596	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0017	4596	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0018	4596	1	0	0	1	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0019	4596	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0020	4596	1	0	0	0	1	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0021	4596	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0022	4596	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0023	4596	1	0	0	1	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0024	4596	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0025	4596	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0026	4596	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0027	4596	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0028	4596	1	0	1	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0029	4596	1	0	1	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0030	4596	1	0	1	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0031	4596	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0032	4596	1	0	0	0	0	1	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0033	4596	1	0	1	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0034	4596	1	0	1	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0035	4596	1	0	0	1	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0036	4596	1	0	0	0	0	1	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0037	4596	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0038	4596	1	0	1	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0039	4596	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0040	4596	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0041	4596	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	c0042	4596	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC2_chr10_99777640_99857594	0/0	c0001	4638	137	18	19	78	1	21	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/1	c0002	4638	88	13	22	43	3	6	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0003	4638	38	11	9	10	2	6	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0004	4638	9	8	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0005	4638	6	1	0	5	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0006	4638	6	5	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594