JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APMAP_chr20_24957925_24997751	0/0	c0009	1251	2	2	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0010	1251	2	0	0	0	0	2	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0011	1251	2	0	0	2	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0012	1251	2	0	0	2	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0013	1251	1	1	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0014	1251	1	0	1	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0015	1251	1	0	1	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0016	1251	1	0	0	0	0	1	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0017	1251	1	1	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0018	1251	1	1	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0019	1251	1	1	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APOA1_chr11_116830751_116842622	1/1	c0001	804	431	90	80	195	16	48	copy fasta	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	c0002	804	13	0	0	13	0	0	copy fasta	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	c0003	804	2	0	0	0	2	0	copy fasta	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	c0004	804	1	1	0	0	0	0	copy fasta	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	c0005	804	1	1	0	0	0	0	copy fasta	APOA1	chr11	116830751	116842622
APOA2_chr1_161217292_161228628	1/1	c0001	303	428	89	74	200	16	47	copy fasta	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	c0002	303	1	1	0	0	0	0	copy fasta	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	c0003	303	1	0	0	0	0	1	copy fasta	APOA2	chr1	161217292	161228628
APOA4_chr11_116815700_116828304	0/1	c0001	1191	224	37	44	118	5	19	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	1/0	c0002	1191	112	6	16	69	2	18	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0003	1191	35	32	3	0	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0004	1191	22	8	8	0	2	4	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0005	1191	17	0	0	17	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0006	1191	14	0	3	6	3	2	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0007	1191	7	0	0	0	4	3	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0008	1191	5	0	4	0	1	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0009	1191	5	5	0	0	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0010	1191	4	4	0	0	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0011	1191	3	2	1	0	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0012	1191	2	0	0	2	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0013	1191	1	0	0	1	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0014	1191	1	0	0	0	0	1	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0015	1191	1	0	0	1	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0016	1179	1	1	0	0	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0017	1191	1	0	1	0	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0018	1191	1	0	0	0	0	1	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0019	1191	1	0	0	0	1	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0020	1191	1	0	0	1	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0021	1191	1	1	0	0	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0022	1191	1	0	0	1	0	0	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0023	1191	1	0	0	0	0	1	copy fasta	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	c0024	1191	1	0	0	0	0	1	copy fasta	APOA4	chr11	116815700	116828304
APOA5_chr11_116784367_116796879	1/1	c0001	1101	352	47	64	177	17	45	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	c0002	1101	64	16	6	40	0	2	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	c0003	1101	22	11	11	0	0	0	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	c0004	1101	18	17	1	0	0	0	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	c0005	1101	8	0	0	7	0	1	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	c0006	1101	5	4	1	0	0	0	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	c0007	1101	2	0	0	2	0	0	copy fasta	APOA5	chr11	116784367	116796879