JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRC3_chr16_3534033_3582403	0/0	c0022	3198	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0023	3198	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0024	3198	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0025	3198	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0026	3198	1	0	0	0	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0027	3198	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0028	3198	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0029	3198	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0030	3198	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0031	3198	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0032	3198	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0033	3198	1	0	0	0	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0034	3198	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0035	3198	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0036	3198	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0037	3198	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0038	3198	1	0	0	0	1	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0039	3198	1	0	0	0	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0040	3198	1	0	0	0	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0041	3198	1	0	0	0	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0042	3198	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0043	3198	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0044	3198	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0045	3198	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0046	3198	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC4_chr2_32219453_32269886	0/0	c0001	3074	165	41	38	60	8	18	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	1/1	c0002	3074	156	26	21	87	6	14	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	0/0	c0003	3074	47	11	8	24	0	4	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	0/0	c0004	3074	10	10	0	0	0	0	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	0/0	c0005	3074	6	0	0	6	0	0	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	0/0	c0006	3074	3	2	1	0	0	0	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	0/0	c0007	3074	2	0	0	2	0	0	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	0/0	c0008	3074	1	1	0	0	0	0	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	0/0	c0009	3074	1	0	1	0	0	0	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	0/0	c0010	3074	1	0	0	1	0	0	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	0/0	c0011	3074	1	0	1	0	0	0	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	0/0	c0012	3074	1	1	0	0	0	0	copy fasta	NLRC4	chr2	32219453	32269886
NLRC5_chr16_56984557_57088520	0/0	c0001	5601	44	1	10	31	0	2	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0002	5601	36	0	6	26	1	3	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0003	5601	32	10	3	13	4	2	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0004	5601	31	0	1	23	0	7	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0005	5601	31	1	11	12	2	5	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0006	5601	25	8	8	5	3	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0007	5601	11	3	1	7	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0008	5601	9	0	0	9	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0009	5601	9	1	2	6	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0010	5601	8	0	0	8	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0011	5601	6	6	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0012	5601	6	0	3	2	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0013	5601	5	0	0	5	0	0	copy fasta	NLRC5	chr16	56984557	57088520