JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRC5_chr16_56984557_57088520	0/0	c0014	5601	5	5	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0015	5601	5	1	4	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0016	5601	5	1	2	0	0	2	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0017	5601	4	4	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0018	5601	4	4	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0019	5601	4	0	1	0	2	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0020	5601	4	3	0	0	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0021	5601	4	0	4	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0022	5601	3	0	0	2	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0023	5601	3	0	0	3	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0024	5601	3	0	0	2	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0025	5601	3	0	0	0	0	3	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0026	5601	3	3	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0027	5601	3	1	0	2	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0028	5601	3	3	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0029	5601	3	3	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0030	5601	3	0	2	0	1	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0031	5601	3	0	0	3	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0032	5601	3	3	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0033	5601	2	0	1	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0034	5601	2	0	0	2	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0035	5601	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0036	5601	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0037	5601	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0038	5601	2	0	1	0	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0039	5601	2	0	1	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0040	5601	2	1	1	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	1/0	c0041	5601	2	0	1	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0042	5601	2	0	0	0	0	2	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0043	5601	2	0	2	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0044	5601	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0045	5601	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0046	5601	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0047	5601	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0048	5601	2	0	0	2	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0049	5601	2	0	2	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0050	5601	2	0	2	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0051	5601	2	0	0	2	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0052	5601	2	0	0	1	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0053	5601	2	0	0	2	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0054	5601	2	0	0	2	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0055	5601	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0056	5601	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0057	5601	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0058	5601	1	0	0	0	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0059	5601	1	0	1	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0060	5601	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0061	5601	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0062	5601	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	c0063	5601	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520