JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRP10_chr11_7952537_7970447	0/0	c0003	1968	19	3	5	10	0	1	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	c0004	1968	13	0	11	0	1	1	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	c0005	1968	5	0	0	5	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	c0006	1968	5	5	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	c0007	1968	4	4	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	c0008	1968	3	3	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	c0009	1968	3	3	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/1	c0010	1968	2	0	1	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	c0011	1968	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	c0012	1968	1	0	0	1	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	c0013	1968	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	c0014	1968	1	0	0	0	0	1	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	c0015	1968	1	0	0	1	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	c0016	1968	1	0	0	0	0	1	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	c0017	1968	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	c0018	1968	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	c0019	1968	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP11_chr19_55780399_55836999	0/0	c0001	3102	92	20	10	46	3	13	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0002	3102	66	3	19	33	6	5	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0003	3102	41	8	6	17	4	6	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0004	3102	25	0	9	15	0	1	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0005	3102	21	0	6	15	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0006	3102	21	8	2	10	0	1	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0007	3102	16	0	3	10	1	2	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0008	3102	15	6	2	6	0	1	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0009	3102	13	7	1	0	2	3	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0010	3102	11	1	0	9	0	1	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0011	3102	10	6	3	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0012	3102	10	0	0	9	1	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0013	3102	8	0	0	8	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0014	3102	7	0	0	7	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0015	3102	7	7	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0016	3102	5	2	1	2	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/1	c0017	3102	5	0	0	0	0	4	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0018	3102	4	0	3	0	1	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0019	3102	4	4	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0020	3102	4	2	1	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0021	3102	4	4	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0022	3102	4	4	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0023	3102	3	0	0	3	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0024	3102	2	0	1	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0025	3102	2	0	0	2	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0026	3102	2	0	0	2	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0027	3102	2	2	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0028	3102	2	2	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0029	3102	2	0	2	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0030	3102	2	1	1	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0031	3102	2	0	0	2	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0032	3102	1	0	0	0	0	1	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0033	3102	1	0	1	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999