JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRP11_chr19_55780399_55836999	1/0	c0034	3102	1	0	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0035	3102	1	0	0	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0036	3102	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0037	3102	1	0	0	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0038	3102	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0039	3102	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0040	3102	1	0	0	0	0	1	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0041	3102	1	0	1	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0042	3102	1	0	0	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0043	3102	1	0	1	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0044	3102	1	0	0	0	0	1	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0045	3102	1	0	0	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0046	3102	1	0	0	0	0	1	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0047	3102	1	0	0	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0048	3102	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0049	3102	1	0	0	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0050	3102	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0051	3102	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0052	3102	1	0	0	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0053	3102	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0054	3102	1	0	0	0	0	1	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0055	3102	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0056	3102	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0057	3102	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0058	3102	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0059	3102	1	0	0	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0060	3102	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0061	3102	1	0	1	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0062	3102	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	c0063	3102	1	0	0	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP12_chr19_53788741_53829314	0/0	c0001	3186	122	8	29	68	5	12	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	1/0	c0002	3186	84	15	8	49	0	11	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0003	3186	81	25	11	27	5	13	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/1	c0004	3186	27	3	6	13	0	4	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0005	3186	22	16	3	2	0	1	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0006	3186	15	1	1	12	1	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0007	3186	9	0	4	1	3	1	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0008	3186	6	1	2	0	2	1	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0009	3186	5	5	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0010	3186	4	4	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0011	3186	4	0	0	4	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0012	3186	3	2	1	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0013	3186	3	0	0	3	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0014	3186	2	2	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0015	3186	2	0	0	0	0	2	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0016	3186	2	2	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0017	3186	2	2	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0018	3186	2	0	2	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0019	3186	1	0	1	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0020	3186	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314