JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRP12_chr19_53788741_53829314	0/0	c0021	3186	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0022	3186	1	0	1	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0023	3186	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0024	3186	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0025	3186	1	0	1	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0026	3186	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0027	3186	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0028	3186	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0029	3186	1	0	0	0	0	1	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0030	3186	1	0	0	0	1	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0031	3186	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0032	3186	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0033	3186	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0034	3186	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0035	3186	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0036	3186	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0037	3186	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0038	3186	1	0	0	0	1	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	c0039	3186	1	0	0	1	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP13_chr19_55890945_55937336	0/0	c0001	3132	71	9	8	39	7	8	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0002	3132	62	28	7	19	1	7	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0003	3132	50	6	1	43	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0004	3132	43	0	10	29	0	4	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0005	3132	42	1	15	8	3	15	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0006	3132	34	10	6	14	2	2	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	1/0	c0007	3132	23	1	14	5	1	1	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/1	c0008	3132	10	3	2	0	3	1	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0009	3132	9	0	3	6	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0010	3132	9	0	1	4	1	3	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0011	3132	8	1	1	6	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0012	3132	8	0	3	5	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0013	3132	5	5	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0014	3132	4	2	1	1	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0015	3132	3	0	0	2	0	1	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0016	3132	3	1	0	2	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0017	3132	3	3	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0018	3132	3	3	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0019	3132	3	1	1	0	0	1	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0020	3132	2	0	0	2	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0021	3132	2	2	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0022	3132	2	1	0	1	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0023	3132	2	2	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0024	3132	2	2	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0025	3132	2	2	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0026	3132	2	2	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0027	3132	2	0	2	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0028	3132	2	0	0	2	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0029	3132	2	0	0	2	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0030	3132	2	0	0	2	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0031	3132	1	0	0	1	0	0	copy fasta	NLRP13	chr19	55890945	55937336