JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRP13_chr19_55890945_55937336	0/0	c0032	3132	1	1	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0033	3132	1	0	0	1	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0034	3132	1	1	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0035	3132	1	1	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0036	3132	1	1	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0037	3132	1	0	1	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0038	3132	1	0	0	0	0	1	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0039	3132	1	0	0	0	0	1	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0040	3132	1	0	0	1	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0041	3132	1	0	0	1	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0042	3132	1	0	1	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0043	3132	1	1	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0044	3132	1	1	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0045	3132	1	0	1	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0046	3132	1	1	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0047	3132	1	1	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0048	3132	1	1	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0049	3132	1	1	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0050	3132	1	1	0	0	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0051	3132	1	0	0	0	0	1	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0052	3132	1	0	0	1	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0053	3132	1	0	0	1	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0054	3132	1	0	0	1	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP13_chr19_55890945_55937336	0/0	c0055	3132	1	0	0	1	0	0	copy fasta	NLRP13	chr19	55890945	55937336
NLRP14_chr11_7015479_7076526	0/1	c0001	3282	119	23	28	46	8	13	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0002	3282	89	26	14	37	2	10	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0003	3282	35	0	3	24	2	6	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0004	3282	30	9	10	4	4	3	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	1/0	c0005	3282	8	5	2	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0006	3282	6	6	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0007	3282	6	0	0	6	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0008	3282	5	0	1	4	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0009	3282	4	0	0	4	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0010	3282	4	2	2	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0011	3282	4	4	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0012	3282	3	3	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0013	3282	3	0	0	3	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0014	3282	3	0	0	3	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0015	3282	2	2	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0016	3282	2	2	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0017	3282	2	2	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0018	3282	2	0	0	2	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0019	3282	2	0	1	0	0	1	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0020	3282	1	0	0	1	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0021	3282	1	0	1	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0022	3282	1	0	0	1	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0023	3282	1	1	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0024	3282	1	1	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0025	3282	1	1	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0026	3282	1	1	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526